Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS04850

Experiment: L-Leucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS04840 and ABZR86_RS04845 are separated by 214 nucleotidesABZR86_RS04845 and ABZR86_RS04850 are separated by 35 nucleotidesABZR86_RS04850 and ABZR86_RS04855 overlap by 4 nucleotides ABZR86_RS04840: ABZR86_RS04840 - serine hydrolase, at 1,082,013 to 1,083,386 _RS04840 ABZR86_RS04845: ABZR86_RS04845 - hypothetical protein, at 1,083,601 to 1,084,062 _RS04845 ABZR86_RS04850: ABZR86_RS04850 - LytTR family DNA-binding domain-containing protein, at 1,084,098 to 1,084,853 _RS04850 ABZR86_RS04855: ABZR86_RS04855 - histidine kinase, at 1,084,850 to 1,085,938 _RS04855 Position (kb) 1084 1085Strain fitness (log2 ratio) -2 -1 0 1at 1083.100 kb on + strand, within ABZR86_RS04840at 1083.100 kb on + strand, within ABZR86_RS04840at 1083.100 kb on + strand, within ABZR86_RS04840at 1083.535 kb on - strandat 1083.623 kb on - strandat 1083.623 kb on - strandat 1083.623 kb on - strandat 1083.623 kb on - strandat 1083.933 kb on + strand, within ABZR86_RS04845at 1084.099 kb on + strandat 1084.558 kb on + strand, within ABZR86_RS04850at 1084.558 kb on + strand, within ABZR86_RS04850at 1084.559 kb on - strand, within ABZR86_RS04850at 1084.793 kb on - strandat 1084.945 kb on - strandat 1085.224 kb on - strand, within ABZR86_RS04855at 1085.344 kb on - strand, within ABZR86_RS04855at 1085.371 kb on + strand, within ABZR86_RS04855at 1085.372 kb on - strand, within ABZR86_RS04855at 1085.520 kb on + strand, within ABZR86_RS04855at 1085.521 kb on - strand, within ABZR86_RS04855at 1085.521 kb on - strand, within ABZR86_RS04855at 1085.521 kb on - strand, within ABZR86_RS04855at 1085.521 kb on - strand, within ABZR86_RS04855at 1085.521 kb on - strand, within ABZR86_RS04855at 1085.575 kb on - strand, within ABZR86_RS04855at 1085.575 kb on - strand, within ABZR86_RS04855at 1085.718 kb on + strand, within ABZR86_RS04855at 1085.718 kb on + strand, within ABZR86_RS04855at 1085.719 kb on - strand, within ABZR86_RS04855

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (N)
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1,083,100 + ABZR86_RS04840 0.79 -0.5
1,083,100 + ABZR86_RS04840 0.79 +0.1
1,083,100 + ABZR86_RS04840 0.79 -0.2
1,083,535 - -0.2
1,083,623 - +0.3
1,083,623 - +1.0
1,083,623 - -0.3
1,083,623 - -0.8
1,083,933 + ABZR86_RS04845 0.72 +1.1
1,084,099 + -2.0
1,084,558 + ABZR86_RS04850 0.61 +0.1
1,084,558 + ABZR86_RS04850 0.61 -0.1
1,084,559 - ABZR86_RS04850 0.61 +0.3
1,084,793 - -0.6
1,084,945 - +1.7
1,085,224 - ABZR86_RS04855 0.34 -0.4
1,085,344 - ABZR86_RS04855 0.45 +1.6
1,085,371 + ABZR86_RS04855 0.48 +1.0
1,085,372 - ABZR86_RS04855 0.48 -0.1
1,085,520 + ABZR86_RS04855 0.62 +0.2
1,085,521 - ABZR86_RS04855 0.62 -0.7
1,085,521 - ABZR86_RS04855 0.62 +0.4
1,085,521 - ABZR86_RS04855 0.62 +0.4
1,085,521 - ABZR86_RS04855 0.62 -0.4
1,085,521 - ABZR86_RS04855 0.62 +0.2
1,085,575 - ABZR86_RS04855 0.67 +0.2
1,085,575 - ABZR86_RS04855 0.67 +1.0
1,085,718 + ABZR86_RS04855 0.80 -0.1
1,085,718 + ABZR86_RS04855 0.80 -0.4
1,085,719 - ABZR86_RS04855 0.80 +0.5

Or see this region's nucleotide sequence