Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS04700

Experiment: L-Leucine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR86_RS04695 and ABZR86_RS04700 are separated by 8 nucleotidesABZR86_RS04700 and ABZR86_RS04705 are separated by 12 nucleotidesABZR86_RS04705 and ABZR86_RS04710 overlap by 4 nucleotides ABZR86_RS04695: ABZR86_RS04695 - glycosyltransferase family 4 protein, at 1,052,614 to 1,053,741 _RS04695 ABZR86_RS04700: ABZR86_RS04700 - radical SAM protein, at 1,053,750 to 1,055,249 _RS04700 ABZR86_RS04705: ABZR86_RS04705 - class I SAM-dependent methyltransferase, at 1,055,262 to 1,055,957 _RS04705 ABZR86_RS04710: ABZR86_RS04710 - amidohydrolase family protein, at 1,055,954 to 1,057,111 _RS04710 Position (kb) 1053 1054 1055 1056Strain fitness (log2 ratio) -1 0 1at 1052.903 kb on + strand, within ABZR86_RS04695at 1053.069 kb on - strand, within ABZR86_RS04695at 1053.203 kb on + strand, within ABZR86_RS04695at 1053.203 kb on + strand, within ABZR86_RS04695at 1053.469 kb on - strand, within ABZR86_RS04695at 1053.563 kb on + strand, within ABZR86_RS04695at 1053.564 kb on - strand, within ABZR86_RS04695at 1053.994 kb on + strand, within ABZR86_RS04700at 1053.994 kb on + strand, within ABZR86_RS04700at 1053.995 kb on - strand, within ABZR86_RS04700at 1053.995 kb on - strand, within ABZR86_RS04700at 1053.995 kb on - strand, within ABZR86_RS04700at 1054.132 kb on + strand, within ABZR86_RS04700at 1054.132 kb on + strand, within ABZR86_RS04700at 1054.133 kb on - strand, within ABZR86_RS04700at 1054.133 kb on - strand, within ABZR86_RS04700at 1054.133 kb on - strand, within ABZR86_RS04700at 1054.133 kb on - strand, within ABZR86_RS04700at 1054.133 kb on - strand, within ABZR86_RS04700at 1054.138 kb on + strand, within ABZR86_RS04700at 1054.138 kb on + strand, within ABZR86_RS04700at 1054.138 kb on + strand, within ABZR86_RS04700at 1054.364 kb on - strand, within ABZR86_RS04700at 1054.364 kb on - strand, within ABZR86_RS04700at 1054.441 kb on + strand, within ABZR86_RS04700at 1054.441 kb on + strand, within ABZR86_RS04700at 1054.441 kb on + strand, within ABZR86_RS04700at 1054.442 kb on - strand, within ABZR86_RS04700at 1054.442 kb on - strand, within ABZR86_RS04700at 1054.555 kb on + strand, within ABZR86_RS04700at 1054.556 kb on - strand, within ABZR86_RS04700at 1054.715 kb on - strand, within ABZR86_RS04700at 1054.841 kb on + strand, within ABZR86_RS04700at 1054.909 kb on + strand, within ABZR86_RS04700at 1054.909 kb on + strand, within ABZR86_RS04700at 1054.945 kb on + strand, within ABZR86_RS04700at 1054.946 kb on - strand, within ABZR86_RS04700at 1054.946 kb on - strand, within ABZR86_RS04700at 1054.946 kb on - strand, within ABZR86_RS04700at 1054.946 kb on - strand, within ABZR86_RS04700at 1054.946 kb on - strand, within ABZR86_RS04700at 1054.946 kb on - strand, within ABZR86_RS04700at 1054.960 kb on + strand, within ABZR86_RS04700at 1054.961 kb on - strand, within ABZR86_RS04700at 1055.099 kb on + strand, within ABZR86_RS04700at 1055.099 kb on + strand, within ABZR86_RS04700at 1055.419 kb on + strand, within ABZR86_RS04705at 1055.420 kb on - strand, within ABZR86_RS04705at 1055.420 kb on - strand, within ABZR86_RS04705at 1055.420 kb on - strand, within ABZR86_RS04705at 1055.433 kb on - strand, within ABZR86_RS04705at 1055.446 kb on + strand, within ABZR86_RS04705at 1055.447 kb on - strand, within ABZR86_RS04705at 1055.581 kb on + strand, within ABZR86_RS04705at 1055.704 kb on + strand, within ABZR86_RS04705

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (N)
remove
1,052,903 + ABZR86_RS04695 0.26 -0.9
1,053,069 - ABZR86_RS04695 0.40 +0.5
1,053,203 + ABZR86_RS04695 0.52 +0.4
1,053,203 + ABZR86_RS04695 0.52 -1.7
1,053,469 - ABZR86_RS04695 0.76 +0.7
1,053,563 + ABZR86_RS04695 0.84 +0.2
1,053,564 - ABZR86_RS04695 0.84 -0.0
1,053,994 + ABZR86_RS04700 0.16 -0.1
1,053,994 + ABZR86_RS04700 0.16 +0.5
1,053,995 - ABZR86_RS04700 0.16 +0.1
1,053,995 - ABZR86_RS04700 0.16 +0.1
1,053,995 - ABZR86_RS04700 0.16 -0.2
1,054,132 + ABZR86_RS04700 0.25 -0.1
1,054,132 + ABZR86_RS04700 0.25 +0.2
1,054,133 - ABZR86_RS04700 0.26 -1.2
1,054,133 - ABZR86_RS04700 0.26 +0.0
1,054,133 - ABZR86_RS04700 0.26 -0.5
1,054,133 - ABZR86_RS04700 0.26 +0.1
1,054,133 - ABZR86_RS04700 0.26 +0.3
1,054,138 + ABZR86_RS04700 0.26 +0.0
1,054,138 + ABZR86_RS04700 0.26 -0.5
1,054,138 + ABZR86_RS04700 0.26 -0.2
1,054,364 - ABZR86_RS04700 0.41 +0.4
1,054,364 - ABZR86_RS04700 0.41 +0.4
1,054,441 + ABZR86_RS04700 0.46 -0.2
1,054,441 + ABZR86_RS04700 0.46 +0.7
1,054,441 + ABZR86_RS04700 0.46 -0.4
1,054,442 - ABZR86_RS04700 0.46 +1.3
1,054,442 - ABZR86_RS04700 0.46 -1.7
1,054,555 + ABZR86_RS04700 0.54 +1.0
1,054,556 - ABZR86_RS04700 0.54 +0.2
1,054,715 - ABZR86_RS04700 0.64 +0.8
1,054,841 + ABZR86_RS04700 0.73 +0.1
1,054,909 + ABZR86_RS04700 0.77 +0.1
1,054,909 + ABZR86_RS04700 0.77 +0.0
1,054,945 + ABZR86_RS04700 0.80 +0.1
1,054,946 - ABZR86_RS04700 0.80 -1.0
1,054,946 - ABZR86_RS04700 0.80 +0.4
1,054,946 - ABZR86_RS04700 0.80 +0.8
1,054,946 - ABZR86_RS04700 0.80 +0.1
1,054,946 - ABZR86_RS04700 0.80 -0.4
1,054,946 - ABZR86_RS04700 0.80 -0.4
1,054,960 + ABZR86_RS04700 0.81 +0.5
1,054,961 - ABZR86_RS04700 0.81 -1.0
1,055,099 + ABZR86_RS04700 0.90 -0.4
1,055,099 + ABZR86_RS04700 0.90 -0.2
1,055,419 + ABZR86_RS04705 0.23 +0.4
1,055,420 - ABZR86_RS04705 0.23 +0.2
1,055,420 - ABZR86_RS04705 0.23 -0.3
1,055,420 - ABZR86_RS04705 0.23 -0.0
1,055,433 - ABZR86_RS04705 0.25 -0.4
1,055,446 + ABZR86_RS04705 0.26 -0.2
1,055,447 - ABZR86_RS04705 0.27 +1.0
1,055,581 + ABZR86_RS04705 0.46 -0.4
1,055,704 + ABZR86_RS04705 0.64 +0.9

Or see this region's nucleotide sequence