Strain Fitness in Shewanella sp. ANA-3 around Shewana3_4107

Experiment: 5-Hydroxymethylfurfural 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	5-Hydroxymethylfurfural 5 mM
4,928,590	-	tdh	Shewana3_4105	0.65	-0.6
4,928,765	+	tdh	Shewana3_4105	0.82	-0.2
4,928,809	-	tdh	Shewana3_4105	0.86	-0.3
4,928,826	-	tdh	Shewana3_4105	0.88	-0.0
4,928,877	-				-1.1
4,928,990	-				-0.0
4,929,006	-				-0.0
4,929,019	+				-0.5
4,929,027	-				+0.4
4,929,069	+				+0.3
4,929,077	-				-0.2
4,929,082	-				-1.0
4,929,088	+		Shewana3_4106	0.12	-0.3
4,929,101	+		Shewana3_4106	0.16	+0.3
4,929,102	+		Shewana3_4106	0.16	-0.2
4,929,110	-		Shewana3_4106	0.19	+0.3
4,929,144	-		Shewana3_4106	0.30	-1.1
4,929,217	+		Shewana3_4106	0.54	-0.1
4,929,225	-		Shewana3_4106	0.57	-0.2
4,929,225	-		Shewana3_4106	0.57	+0.7
4,929,225	-		Shewana3_4106	0.57	+0.2
4,929,309	+		Shewana3_4106	0.84	-0.3
4,929,390	+				-0.3
4,929,417	+				-0.4
4,929,418	-				+0.2
4,929,577	+		Shewana3_4107	0.26	-1.3
4,929,710	-		Shewana3_4107	0.42	-0.5
4,929,787	+		Shewana3_4107	0.51	+0.0
4,929,811	-		Shewana3_4107	0.54	-0.5
4,930,004	+		Shewana3_4107	0.77	+0.9
4,930,012	-		Shewana3_4107	0.78	-1.6
4,930,191	+				-0.1
4,930,233	+				+0.2
4,930,239	+				-0.9
4,930,246	+				-0.5
4,930,248	-				-0.0
4,930,267	-				+0.3
4,930,347	+		Shewana3_4108	0.11	-1.8
4,930,397	-		Shewana3_4108	0.19	-0.0
4,930,397	-		Shewana3_4108	0.19	+0.1
4,930,404	-		Shewana3_4108	0.20	+0.0
4,930,414	-		Shewana3_4108	0.21	-0.1
4,930,443	-		Shewana3_4108	0.26	+0.2
4,930,477	-		Shewana3_4108	0.31	+0.1
4,930,652	+		Shewana3_4108	0.58	+0.1
4,930,652	+		Shewana3_4108	0.58	-0.2
4,930,653	+		Shewana3_4108	0.58	-0.2
4,930,722	-		Shewana3_4108	0.68	-0.6