Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3824

Experiment: 5-Hydroxymethylfurfural 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	5-Hydroxymethylfurfural 5 mM
4,590,620	+				-1.0
4,590,620	+				-0.5
4,590,628	-				+0.3
4,590,941	+		Shewana3_3823	0.66	-0.8
4,591,138	-				-1.1
4,591,145	-				+0.0
4,591,200	-				+0.9
4,591,471	-				+0.2
4,591,758	-		Shewana3_3824	0.39	-0.7
4,591,872	-		Shewana3_3824	0.54	+0.4
4,591,901	+		Shewana3_3824	0.57	+0.1
4,591,909	-		Shewana3_3824	0.58	+0.5
4,591,926	+		Shewana3_3824	0.60	+0.7
4,592,017	-		Shewana3_3824	0.72	-0.2
4,592,061	+		Shewana3_3824	0.78	+0.1
4,592,061	+		Shewana3_3824	0.78	-0.0
4,592,069	-		Shewana3_3824	0.79	-0.9
4,592,116	-		Shewana3_3824	0.85	-0.0
4,592,264	+				-0.1
4,592,302	-				-0.0
4,592,308	-				+0.1
4,592,319	+				-0.3
4,592,337	+				+0.1
4,592,405	+	prpB	Shewana3_3825	0.11	+0.6
4,592,512	-	prpB	Shewana3_3825	0.24	-0.8
4,592,565	+	prpB	Shewana3_3825	0.30	+0.3
4,592,565	+	prpB	Shewana3_3825	0.30	+0.8
4,592,573	-	prpB	Shewana3_3825	0.31	+0.2
4,592,573	-	prpB	Shewana3_3825	0.31	+0.3
4,592,573	-	prpB	Shewana3_3825	0.31	-0.2
4,592,695	+	prpB	Shewana3_3825	0.44	+0.6
4,592,861	+	prpB	Shewana3_3825	0.63	+0.5
4,592,870	-	prpB	Shewana3_3825	0.64	-1.0
4,593,004	-	prpB	Shewana3_3825	0.80	-0.5
4,593,013	-	prpB	Shewana3_3825	0.81	-0.6
4,593,059	+	prpB	Shewana3_3825	0.86	-2.1
4,593,084	+	prpB	Shewana3_3825	0.89	+0.2
4,593,084	+	prpB	Shewana3_3825	0.89	+0.3
4,593,084	+	prpB	Shewana3_3825	0.89	+0.2
4,593,084	+	prpB	Shewana3_3825	0.89	+0.3
4,593,084	+	prpB	Shewana3_3825	0.89	-0.3
4,593,092	-	prpB	Shewana3_3825	0.90	-0.3
4,593,092	-	prpB	Shewana3_3825	0.90	-0.2
4,593,096	+				+0.3
4,593,096	+				+0.6
4,593,096	+				+0.1
4,593,104	-				+1.4
4,593,104	-				+0.7
4,593,106	+				-0.3
4,593,222	-				+0.1