Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3674

Experiment: 5-Hydroxymethylfurfural 5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntargS and Shewana3_3674 are separated by 3 nucleotidesShewana3_3674 and Shewana3_3675 are separated by 303 nucleotidesShewana3_3675 and Shewana3_3676 are separated by 206 nucleotides Shewana3_3673: argS - arginyl-tRNA synthetase (RefSeq), at 4,412,343 to 4,414,088 argS Shewana3_3674: Shewana3_3674 - sporulation domain-containing protein (RefSeq), at 4,414,092 to 4,414,787 _3674 Shewana3_3675: Shewana3_3675 - hypothetical protein (RefSeq), at 4,415,091 to 4,415,315 _3675 Shewana3_3676: Shewana3_3676 - SPFH domain-containing protein/band 7 family protein (RefSeq), at 4,415,522 to 4,416,454 _3676 Position (kb) 4414 4415Strain fitness (log2 ratio) -1 0 1at 4415.039 kb on + strandat 4415.047 kb on - strandat 4415.106 kb on - strandat 4415.367 kb on - strandat 4415.626 kb on + strand, within Shewana3_3676

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 5 mM
remove
4,415,039 + +0.2
4,415,047 - +0.1
4,415,106 - +0.3
4,415,367 - -0.8
4,415,626 + Shewana3_3676 0.11 -1.2

Or see this region's nucleotide sequence