Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3589

Experiment: 5-Hydroxymethylfurfural 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	5-Hydroxymethylfurfural 5 mM
4,308,736	-		Shewana3_3588	0.75	-0.2
4,308,796	+		Shewana3_3588	0.77	-0.0
4,308,911	+		Shewana3_3588	0.81	-1.5
4,308,911	+		Shewana3_3588	0.81	-1.9
4,309,163	-				+0.1
4,309,183	-				-0.6
4,309,286	-				-0.7
4,309,295	+				-0.9
4,309,297	+				-0.4
4,309,318	+				-0.5
4,309,350	-				-1.4
4,309,350	-				+0.0
4,309,350	-				-0.5
4,309,374	-				+0.2
4,309,419	-				-0.6
4,309,503	-				-0.2
4,309,503	-				-0.5
4,309,678	+				+0.2
4,309,678	-				+2.5
4,309,680	+				-1.9
4,309,694	+				+0.0
4,309,694	+				+0.4
4,309,694	+				-0.5
4,309,694	+				-0.1
4,309,694	+				+0.1
4,309,702	-				+1.2
4,309,702	-				-0.5
4,309,704	+				-0.6
4,309,704	+				-0.9
4,309,704	+				-0.2
4,309,712	-				-1.0
4,309,718	-				+0.1
4,309,728	-				-0.5
4,309,735	+				-0.5
4,309,738	-				+0.2
4,309,740	+				-1.1
4,309,740	+				+0.0
4,309,740	+				-0.0
4,309,740	+				+0.0
4,309,740	+				+1.0
4,309,745	+				+0.4
4,309,745	+				-0.5
4,309,745	+				+1.1
4,309,745	+				-1.0
4,309,745	+				-2.0
4,309,748	-				-0.5
4,309,748	-				-0.0
4,309,753	-				+0.0
4,309,753	-				-0.7
4,309,753	-				-0.9
4,309,753	-				-0.5
4,309,753	-				-0.4
4,309,753	-				+0.1
4,309,753	-				+0.1
4,309,753	-				-0.1
4,309,753	-				+0.2
4,309,753	-				-0.2
4,309,761	-				-0.3
4,309,766	+				+0.8
4,309,779	-				-0.4
4,309,784	-				+0.4
4,309,784	-				-0.5
4,309,806	+		Shewana3_3589	0.12	-0.7
4,309,808	-		Shewana3_3589	0.13	+0.3
4,309,844	+		Shewana3_3589	0.19	-1.1
4,309,844	+		Shewana3_3589	0.19	-0.7
4,309,844	+		Shewana3_3589	0.19	-1.8
4,309,844	+		Shewana3_3589	0.19	-0.5
4,309,865	+		Shewana3_3589	0.22	-0.8
4,309,895	+		Shewana3_3589	0.27	-2.4
4,309,966	+		Shewana3_3589	0.39	-0.2
4,309,968	+		Shewana3_3589	0.40	+1.1
4,309,977	-		Shewana3_3589	0.41	-0.8
4,309,991	+		Shewana3_3589	0.43	-1.5
4,309,991	+		Shewana3_3589	0.43	-0.4
4,309,991	+		Shewana3_3589	0.43	-2.2
4,309,999	-		Shewana3_3589	0.45	-1.4
4,310,003	+		Shewana3_3589	0.45	-0.8
4,310,003	+		Shewana3_3589	0.45	-0.8
4,310,011	-		Shewana3_3589	0.47	-0.6
4,310,011	-		Shewana3_3589	0.47	-2.9
4,310,017	-		Shewana3_3589	0.48	-0.0
4,310,032	-		Shewana3_3589	0.50	+0.7
4,310,070	+		Shewana3_3589	0.57	-0.0
4,310,070	+		Shewana3_3589	0.57	-0.8
4,310,131	-		Shewana3_3589	0.67	+0.5
4,310,138	-		Shewana3_3589	0.68	+0.3
4,310,140	+		Shewana3_3589	0.69	-1.1
4,310,140	+		Shewana3_3589	0.69	-0.1
4,310,140	+		Shewana3_3589	0.69	+0.5
4,310,140	+		Shewana3_3589	0.69	+0.1
4,310,185	+		Shewana3_3589	0.76	-0.5
4,310,185	+		Shewana3_3589	0.76	-0.3
4,310,185	+		Shewana3_3589	0.76	-1.4
4,310,186	+		Shewana3_3589	0.76	-0.3
4,310,193	-		Shewana3_3589	0.77	-1.5
4,310,193	-		Shewana3_3589	0.77	-1.5
4,310,249	-		Shewana3_3589	0.87	-1.8
4,310,251	+		Shewana3_3589	0.87	-0.2
4,310,320	-				-1.7
4,310,333	+				+1.3
4,310,390	+				-0.5
4,310,414	+				-0.2
4,310,440	-				-0.4