Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2671

Experiment: 5-Hydroxymethylfurfural 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2670 and Shewana3_2671 overlap by 8 nucleotidesShewana3_2671 and Shewana3_2672 are separated by 426 nucleotides Shewana3_2670: Shewana3_2670 - ferrous iron transport protein B (RefSeq), at 3,187,357 to 3,189,651 _2670 Shewana3_2671: Shewana3_2671 - FeoA family protein (RefSeq), at 3,189,644 to 3,189,883 _2671 Shewana3_2672: Shewana3_2672 - cytochrome C family protein (RefSeq), at 3,190,310 to 3,191,275 _2672 Position (kb) 3189 3190Strain fitness (log2 ratio) -1 0 1at 3189.217 kb on + strand, within Shewana3_2670at 3190.376 kb on + strandat 3190.591 kb on + strand, within Shewana3_2672at 3190.632 kb on - strand, within Shewana3_2672

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Per-strain Table

Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 5 mM
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3,189,217 + Shewana3_2670 0.81 +0.7
3,190,376 + -0.6
3,190,591 + Shewana3_2672 0.29 +1.7
3,190,632 - Shewana3_2672 0.33 -0.2

Or see this region's nucleotide sequence