Experiment: 5-Hydroxymethylfurfural 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2593 and Shewana3_2594 overlap by 4 nucleotides Shewana3_2594 and Shewana3_2595 are separated by 195 nucleotides Shewana3_2595 and Shewana3_2596 are separated by 138 nucleotides Shewana3_2596 and Shewana3_2597 are separated by 131 nucleotides
Shewana3_2593: Shewana3_2593 - signal transduction histidine kinase, LytS (RefSeq), at 3,096,472 to 3,098,154
_2593
Shewana3_2594: Shewana3_2594 - putative two-component response-regulatory protein YehT (RefSeq), at 3,098,151 to 3,098,861
_2594
Shewana3_2595: Shewana3_2595 - carbon starvation protein CstA (RefSeq), at 3,099,057 to 3,100,511
_2595
Shewana3_2596: Shewana3_2596 - hypothetical protein (RefSeq), at 3,100,650 to 3,101,018
_2596
Shewana3_2597: Shewana3_2597 - L-sorbosone dehydrogenase (SNDH) (RefSeq), at 3,101,150 to 3,102,292
_2597
Position (kb)
3099
3100
3101 Strain fitness (log2 ratio)
-2
-1
0
1 at 3098.072 kb on + strand at 3098.403 kb on - strand, within Shewana3_2594 at 3099.074 kb on - strand at 3099.376 kb on - strand, within Shewana3_2595 at 3099.388 kb on + strand, within Shewana3_2595 at 3099.487 kb on - strand, within Shewana3_2595 at 3099.520 kb on + strand, within Shewana3_2595 at 3099.648 kb on + strand, within Shewana3_2595 at 3099.687 kb on - strand, within Shewana3_2595 at 3099.746 kb on + strand, within Shewana3_2595 at 3099.759 kb on - strand, within Shewana3_2595 at 3099.950 kb on - strand, within Shewana3_2595 at 3100.041 kb on - strand, within Shewana3_2595 at 3100.253 kb on + strand, within Shewana3_2595 at 3100.385 kb on - strand at 3100.434 kb on + strand at 3100.629 kb on + strand at 3100.637 kb on - strand at 3101.491 kb on - strand, within Shewana3_2597
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 5 mM remove 3,098,072 + -1.3 3,098,403 - Shewana3_2594 0.35 -1.3 3,099,074 - +0.1 3,099,376 - Shewana3_2595 0.22 +1.7 3,099,388 + Shewana3_2595 0.23 +0.1 3,099,487 - Shewana3_2595 0.30 -0.3 3,099,520 + Shewana3_2595 0.32 +0.1 3,099,648 + Shewana3_2595 0.41 +1.7 3,099,687 - Shewana3_2595 0.43 +0.7 3,099,746 + Shewana3_2595 0.47 -1.1 3,099,759 - Shewana3_2595 0.48 +0.7 3,099,950 - Shewana3_2595 0.61 -1.3 3,100,041 - Shewana3_2595 0.68 -1.3 3,100,253 + Shewana3_2595 0.82 -0.4 3,100,385 - -2.5 3,100,434 + -1.0 3,100,629 + -1.1 3,100,637 - -0.8 3,101,491 - Shewana3_2597 0.30 -0.2
Or see this region's nucleotide sequence