Experiment: 5-Hydroxymethylfurfural 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2536 and Shewana3_2537 are separated by 704 nucleotides Shewana3_2537 and Shewana3_2538 are separated by 116 nucleotides Shewana3_2538 and Shewana3_2539 are separated by 116 nucleotides
Shewana3_2536: Shewana3_2536 - prolyl oligopeptidase (RefSeq), at 3,031,577 to 3,033,757
_2536
Shewana3_2537: Shewana3_2537 - FAD-dependent pyridine nucleotide-disulphide oxidoreductase (RefSeq), at 3,034,462 to 3,035,361
_2537
Shewana3_2538: Shewana3_2538 - BadM/Rrf2 family transcriptional regulator (RefSeq), at 3,035,478 to 3,035,891
_2538
Shewana3_2539: Shewana3_2539 - OmpA/MotB domain-containing protein (RefSeq), at 3,036,008 to 3,036,880
_2539
Position (kb)
3034
3035
3036 Strain fitness (log2 ratio)
-1
0
1 at 3033.627 kb on - strand at 3033.728 kb on + strand at 3033.795 kb on + strand at 3033.807 kb on + strand at 3034.263 kb on - strand at 3034.350 kb on + strand at 3034.350 kb on + strand at 3034.382 kb on + strand at 3034.423 kb on - strand at 3034.767 kb on - strand, within Shewana3_2537 at 3035.313 kb on + strand at 3035.970 kb on + strand at 3036.044 kb on + strand at 3036.103 kb on + strand, within Shewana3_2539 at 3036.125 kb on - strand, within Shewana3_2539
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 5 mM remove 3,033,627 - -0.3 3,033,728 + -1.3 3,033,795 + +1.0 3,033,807 + -1.2 3,034,263 - +0.1 3,034,350 + -0.9 3,034,350 + +0.1 3,034,382 + -0.9 3,034,423 - -1.3 3,034,767 - Shewana3_2537 0.34 -0.6 3,035,313 + -0.3 3,035,970 + +0.1 3,036,044 + +0.4 3,036,103 + Shewana3_2539 0.11 -1.3 3,036,125 - Shewana3_2539 0.13 +0.3
Or see this region's nucleotide sequence