Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2270

Experiment: 5-Hydroxymethylfurfural 5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_2269 and ilvH overlap by 1 nucleotidesilvH and Shewana3_2271 are separated by 134 nucleotidesShewana3_2271 and Shewana3_2272 are separated by 304 nucleotides Shewana3_2269: Shewana3_2269 - acetolactate synthase 3 catalytic subunit (RefSeq), at 2,733,051 to 2,734,769 _2269 Shewana3_2270: ilvH - acetolactate synthase 3 regulatory subunit (RefSeq), at 2,734,769 to 2,735,263 ilvH Shewana3_2271: Shewana3_2271 - heat shock protein Hsp20 (RefSeq), at 2,735,398 to 2,735,841 _2271 Shewana3_2272: Shewana3_2272 - nucleoside diphosphate kinase (RefSeq), at 2,736,146 to 2,736,577 _2272 Position (kb) 2734 2735 2736Strain fitness (log2 ratio) -1 0 1at 2734.029 kb on + strand, within Shewana3_2269at 2734.421 kb on + strand, within Shewana3_2269at 2734.693 kb on - strandat 2734.695 kb on + strandat 2734.700 kb on + strandat 2735.123 kb on + strand, within ilvHat 2735.222 kb on + strandat 2736.120 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 5 mM
remove
2,734,029 + Shewana3_2269 0.57 +0.8
2,734,421 + Shewana3_2269 0.80 -0.3
2,734,693 - -1.2
2,734,695 + +1.0
2,734,700 + -0.6
2,735,123 + ilvH Shewana3_2270 0.72 +0.9
2,735,222 + +0.9
2,736,120 - -1.4

Or see this region's nucleotide sequence