Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2023

Experiment: 5-Hydroxymethylfurfural 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	5-Hydroxymethylfurfural 5 mM
2,417,261	+		Shewana3_2022	0.20	+2.0
2,417,269	-		Shewana3_2022	0.20	+0.4
2,417,310	-		Shewana3_2022	0.24	-1.0
2,417,310	-		Shewana3_2022	0.24	+0.4
2,417,310	-		Shewana3_2022	0.24	-1.2
2,417,312	-		Shewana3_2022	0.24	+1.0
2,417,315	-		Shewana3_2022	0.24	-0.4
2,417,340	-		Shewana3_2022	0.26	-2.0
2,417,424	+		Shewana3_2022	0.33	+1.0
2,417,432	-		Shewana3_2022	0.34	+2.0
2,417,516	+		Shewana3_2022	0.40	-0.0
2,417,518	+		Shewana3_2022	0.41	+2.0
2,417,534	-		Shewana3_2022	0.42	+0.4
2,417,534	-		Shewana3_2022	0.42	+2.0
2,417,536	-		Shewana3_2022	0.42	+1.0
2,417,668	+		Shewana3_2022	0.53	+0.4
2,417,668	+		Shewana3_2022	0.53	+2.0
2,417,668	+		Shewana3_2022	0.53	+0.4
2,417,676	-		Shewana3_2022	0.54	+0.4
2,417,684	+		Shewana3_2022	0.54	+2.0
2,417,684	+		Shewana3_2022	0.54	+2.0
2,417,772	+		Shewana3_2022	0.61	+2.0
2,417,772	+		Shewana3_2022	0.61	+1.0
2,417,772	+		Shewana3_2022	0.61	+0.8
2,417,780	-		Shewana3_2022	0.62	+0.3
2,417,780	-		Shewana3_2022	0.62	-0.8
2,417,780	-		Shewana3_2022	0.62	+0.4
2,417,793	+		Shewana3_2022	0.63	+2.0
2,417,801	-		Shewana3_2022	0.64	-1.6
2,417,802	-		Shewana3_2022	0.64	+2.0
2,417,840	-		Shewana3_2022	0.67	+2.0
2,417,851	-		Shewana3_2022	0.68	+1.0
2,417,945	-		Shewana3_2022	0.75	-0.5
2,417,982	+		Shewana3_2022	0.79	+0.6
2,417,989	-		Shewana3_2022	0.79	+2.0
2,418,011	+		Shewana3_2022	0.81	-0.1
2,418,011	-		Shewana3_2022	0.81	-0.9
2,418,026	-		Shewana3_2022	0.82	-0.0
2,418,182	+				+2.0
2,418,183	-				-1.0
2,418,183	-				-0.0
2,418,229	+				+0.4
2,418,237	-				-2.0
2,418,237	-				-0.5
2,418,237	-				+0.7
2,418,246	+				+1.0
2,418,285	-		Shewana3_2023	0.20	+0.4
2,418,398	-		Shewana3_2023	0.68	+0.4
2,418,408	+		Shewana3_2023	0.72	-1.2
2,418,425	+		Shewana3_2023	0.79	-0.0
2,418,425	+		Shewana3_2023	0.79	-0.7
2,418,464	-				+0.4
2,418,471	+				+0.4
2,418,567	+				+2.0
2,418,918	-				+2.0
2,418,986	+				+0.5
2,418,999	-				-0.0
2,419,075	+				+1.0
2,419,083	-				-0.4
2,419,123	+				+1.3
2,419,125	-				+1.0
2,419,131	-				+1.0
2,419,136	+				-0.2
2,419,144	-				+1.0
2,419,144	-				+1.0
2,419,278	+				+0.4
2,419,278	+				+0.7
2,419,278	+				-0.1
2,419,278	+				+0.5
2,419,286	-				-0.0
2,419,286	-				+3.0