Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1631
Experiment: 5-Hydroxymethylfurfural 5 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | 5-Hydroxymethylfurfural 5 mM |
---|---|---|---|---|---|
remove | |||||
1,917,555 | - | Shewana3_1629 | 0.84 | +0.1 | |
1,917,956 | - | +0.1 | |||
1,917,983 | - | +0.1 | |||
1,918,213 | + | Shewana3_1630 | 0.61 | +1.7 | |
1,918,626 | - | +2.7 | |||
1,918,925 | + | Shewana3_1631 | 0.39 | -1.2 | |
1,918,932 | + | Shewana3_1631 | 0.39 | -0.5 | |
1,919,344 | + | Shewana3_1631 | 0.82 | -1.0 | |
1,919,471 | + | -1.8 | |||
1,919,487 | + | -0.3 | |||
1,920,056 | + | Shewana3_1632 | 0.19 | +1.7 | |
1,920,084 | - | Shewana3_1632 | 0.20 | +0.7 | |
1,920,118 | - | Shewana3_1632 | 0.22 | -0.6 | |
1,920,146 | - | Shewana3_1632 | 0.23 | -0.9 | |
1,920,167 | + | Shewana3_1632 | 0.24 | +2.1 | |
1,920,268 | - | Shewana3_1632 | 0.27 | +1.7 | |
1,920,296 | + | Shewana3_1632 | 0.29 | +0.2 | |
1,920,304 | - | Shewana3_1632 | 0.29 | -0.6 | |
1,920,329 | - | Shewana3_1632 | 0.30 | +0.1 |
Or see this region's nucleotide sequence