Experiment: 5-Hydroxymethylfurfural 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1626 and Shewana3_1627 are separated by 18 nucleotides Shewana3_1627 and Shewana3_1628 are separated by 151 nucleotides Shewana3_1628 and Shewana3_1629 are separated by 160 nucleotides Shewana3_1629 and Shewana3_1630 are separated by 366 nucleotides
Shewana3_1626: Shewana3_1626 - pyridoxamine 5'-phosphate oxidase (RefSeq), at 1,915,257 to 1,915,895
_1626
Shewana3_1627: Shewana3_1627 - hypothetical protein (RefSeq), at 1,915,914 to 1,916,366
_1627
Shewana3_1628: Shewana3_1628 - YceI family protein (RefSeq), at 1,916,518 to 1,917,093
_1628
Shewana3_1629: Shewana3_1629 - hypothetical protein (RefSeq), at 1,917,254 to 1,917,610
_1629
Shewana3_1630: Shewana3_1630 - hypothetical protein (RefSeq), at 1,917,977 to 1,918,360
_1630
Position (kb)
1916
1917
1918 Strain fitness (log2 ratio)
-1
0
1 at 1915.904 kb on + strand at 1915.920 kb on - strand at 1915.922 kb on + strand at 1916.732 kb on + strand, within Shewana3_1628 at 1916.745 kb on + strand, within Shewana3_1628 at 1916.850 kb on + strand, within Shewana3_1628 at 1916.850 kb on + strand, within Shewana3_1628 at 1916.858 kb on - strand, within Shewana3_1628 at 1917.061 kb on + strand at 1917.424 kb on + strand, within Shewana3_1629 at 1917.555 kb on - strand, within Shewana3_1629 at 1917.956 kb on - strand at 1917.983 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 5 mM remove 1,915,904 + +0.4 1,915,920 - +0.7 1,915,922 + +1.3 1,916,732 + Shewana3_1628 0.37 +1.3 1,916,745 + Shewana3_1628 0.39 +0.5 1,916,850 + Shewana3_1628 0.58 +0.6 1,916,850 + Shewana3_1628 0.58 +1.7 1,916,858 - Shewana3_1628 0.59 +1.7 1,917,061 + +1.0 1,917,424 + Shewana3_1629 0.48 -0.3 1,917,555 - Shewana3_1629 0.84 +0.1 1,917,956 - +0.1 1,917,983 - +0.1
Or see this region's nucleotide sequence