Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1617

Experiment: 5-Hydroxymethylfurfural 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	5-Hydroxymethylfurfural 5 mM
1,901,573	+		Shewana3_1616	0.39	+1.7
1,901,581	-		Shewana3_1616	0.40	-0.3
1,901,581	-		Shewana3_1616	0.40	+0.4
1,901,581	-		Shewana3_1616	0.40	+0.1
1,901,597	-		Shewana3_1616	0.41	+0.7
1,901,597	-		Shewana3_1616	0.41	+0.1
1,901,637	-		Shewana3_1616	0.44	+0.1
1,901,718	+		Shewana3_1616	0.50	+1.7
1,901,743	-		Shewana3_1616	0.52	+1.1
1,901,745	+		Shewana3_1616	0.52	+1.7
1,901,745	+		Shewana3_1616	0.52	+1.7
1,901,745	+		Shewana3_1616	0.52	+2.7
1,901,745	+		Shewana3_1616	0.52	+2.7
1,901,745	+		Shewana3_1616	0.52	+0.3
1,901,745	+		Shewana3_1616	0.52	-2.2
1,901,745	+		Shewana3_1616	0.52	+1.7
1,901,753	-		Shewana3_1616	0.52	+0.7
1,901,753	-		Shewana3_1616	0.52	-0.6
1,901,753	-		Shewana3_1616	0.52	-0.0
1,901,753	-		Shewana3_1616	0.52	+0.1
1,901,753	-		Shewana3_1616	0.52	+0.7
1,901,753	-		Shewana3_1616	0.52	+1.7
1,901,753	-		Shewana3_1616	0.52	+1.7
1,901,753	-		Shewana3_1616	0.52	+0.7
1,901,753	-		Shewana3_1616	0.52	-0.3
1,901,753	-		Shewana3_1616	0.52	+1.7
1,901,753	-		Shewana3_1616	0.52	+0.7
1,901,753	-		Shewana3_1616	0.52	-0.3
1,901,870	+		Shewana3_1616	0.61	+1.7
1,901,870	+		Shewana3_1616	0.61	+1.7
1,901,870	+		Shewana3_1616	0.61	-0.3
1,901,870	+		Shewana3_1616	0.61	+0.1
1,901,870	+		Shewana3_1616	0.61	+0.7
1,901,870	+		Shewana3_1616	0.61	+0.1
1,901,870	+		Shewana3_1616	0.61	-1.5
1,901,870	-		Shewana3_1616	0.61	+1.7
1,901,873	-		Shewana3_1616	0.61	-0.6
1,901,876	-		Shewana3_1616	0.61	-0.6
1,901,878	-		Shewana3_1616	0.61	+0.7
1,901,878	-		Shewana3_1616	0.61	+0.7
1,901,878	-		Shewana3_1616	0.61	-1.6
1,901,878	-		Shewana3_1616	0.61	+1.7
1,901,929	+		Shewana3_1616	0.65	+0.5
1,901,945	-		Shewana3_1616	0.66	-0.3
1,901,953	+		Shewana3_1616	0.67	+1.7
1,902,000	-		Shewana3_1616	0.70	+1.7
1,902,013	-		Shewana3_1616	0.71	+0.7
1,902,036	+		Shewana3_1616	0.73	+1.7
1,902,044	-		Shewana3_1616	0.73	-0.9
1,902,057	+		Shewana3_1616	0.74	+1.7
1,902,075	+		Shewana3_1616	0.76	+0.3
1,902,080	-		Shewana3_1616	0.76	+0.7
1,902,089	+				+0.7
1,902,093	+		Shewana3_1616	0.77	-0.3
1,902,101	+		Shewana3_1616	0.77	-1.1
1,902,101	-		Shewana3_1616	0.77	+1.7
1,902,101	-		Shewana3_1616	0.77	+1.7
1,902,101	-		Shewana3_1616	0.77	+0.7
1,902,109	-		Shewana3_1616	0.78	-0.3
1,902,109	-		Shewana3_1616	0.78	+0.7
1,902,114	-		Shewana3_1616	0.78	+0.7
1,902,115	+		Shewana3_1616	0.78	-0.9
1,902,117	-		Shewana3_1616	0.79	+1.4
1,902,120	+		Shewana3_1616	0.79	+1.7
1,902,123	-		Shewana3_1616	0.79	+1.7
1,902,123	-		Shewana3_1616	0.79	+1.7
1,902,123	-		Shewana3_1616	0.79	-0.9
1,902,125	+		Shewana3_1616	0.79	+0.7
1,902,148	-		Shewana3_1616	0.81	+0.7
1,902,148	-		Shewana3_1616	0.81	+0.1
1,902,149	-		Shewana3_1616	0.81	+0.7
1,902,172	+		Shewana3_1616	0.83	+0.7
1,902,173	+		Shewana3_1616	0.83	+1.7
1,902,173	+		Shewana3_1616	0.83	+1.7
1,902,180	+		Shewana3_1616	0.83	+1.7
1,902,180	-		Shewana3_1616	0.83	+0.7
1,902,180	-		Shewana3_1616	0.83	+1.7
1,902,180	-		Shewana3_1616	0.83	+0.7
1,902,186	+		Shewana3_1616	0.84	+0.7
1,902,186	+		Shewana3_1616	0.84	-0.3
1,902,188	-		Shewana3_1616	0.84	-0.3
1,902,194	-		Shewana3_1616	0.84	-0.6
1,902,258	+		Shewana3_1616	0.89	+0.2
1,902,260	+		Shewana3_1616	0.89	+0.6
1,902,279	+				-0.9
1,902,287	+				+0.1
1,902,296	+				-1.9
1,902,296	+				-0.8
1,902,296	+				-0.3
1,902,304	-				-0.6
1,902,304	-				+0.7
1,902,355	+				+0.7
1,902,355	+				-1.8
1,902,363	-				+0.7
1,902,363	-				+0.7
1,902,363	-				+1.1
1,902,363	-				+0.7
1,902,363	-				+1.7
1,902,363	-				-0.9
1,902,363	-				+0.1
1,902,370	+				+0.1
1,902,377	+				+0.7
1,902,378	-				-0.3
1,902,379	+				+1.7
1,902,379	+				+1.1
1,902,387	-				+1.7
1,902,389	+				-1.6
1,902,413	+				+0.1
1,902,442	-				-0.9
1,902,450	-				+1.7
1,902,473	-				-0.9
1,902,551	+				+0.7
1,902,582	-				+0.7
1,902,587	+				+0.7
1,902,588	+				+0.4
1,902,595	-				-2.0
1,902,595	-				-0.6
1,902,595	-				-1.3
1,902,595	-				+0.2
1,902,595	-				-0.9
1,902,698	-		Shewana3_1617	0.18	+0.1
1,902,700	+		Shewana3_1617	0.19	+0.1
1,902,717	+		Shewana3_1617	0.21	+0.7
1,902,719	+		Shewana3_1617	0.21	-1.3
1,902,719	+		Shewana3_1617	0.21	+0.2
1,902,719	+		Shewana3_1617	0.21	-1.3
1,902,719	+		Shewana3_1617	0.21	-1.1
1,902,727	-		Shewana3_1617	0.22	+0.1
1,902,727	-		Shewana3_1617	0.22	+0.7
1,902,729	+		Shewana3_1617	0.22	-0.6
1,902,729	+		Shewana3_1617	0.22	+1.7
1,902,737	+		Shewana3_1617	0.23	-0.3
1,902,737	+		Shewana3_1617	0.23	-0.9
1,902,737	+		Shewana3_1617	0.23	+0.1
1,902,737	-		Shewana3_1617	0.23	-0.1
1,902,737	-		Shewana3_1617	0.23	-0.6
1,902,737	-		Shewana3_1617	0.23	+0.7
1,902,775	+		Shewana3_1617	0.28	+0.7
1,902,775	+		Shewana3_1617	0.28	+0.1
1,902,775	+		Shewana3_1617	0.28	+0.1
1,902,783	-		Shewana3_1617	0.28	+0.7
1,902,783	-		Shewana3_1617	0.28	+1.1
1,902,790	-		Shewana3_1617	0.29	+0.7
1,902,806	-		Shewana3_1617	0.31	+1.7
1,902,820	+		Shewana3_1617	0.33	-0.6
1,902,854	+		Shewana3_1617	0.37	+1.7
1,902,872	+		Shewana3_1617	0.39	-0.6
1,902,872	+		Shewana3_1617	0.39	-0.9
1,902,872	+		Shewana3_1617	0.39	-1.3
1,902,872	+		Shewana3_1617	0.39	+1.2
1,902,872	+		Shewana3_1617	0.39	+1.7
1,902,872	+		Shewana3_1617	0.39	+0.7
1,902,872	+		Shewana3_1617	0.39	+0.7
1,902,872	+		Shewana3_1617	0.39	+1.7
1,902,872	+		Shewana3_1617	0.39	-1.3
1,902,872	+		Shewana3_1617	0.39	+0.9
1,902,872	+		Shewana3_1617	0.39	-1.9
1,902,880	-		Shewana3_1617	0.40	-0.6
1,902,880	-		Shewana3_1617	0.40	+0.1
1,902,880	-		Shewana3_1617	0.40	-0.3
1,902,880	-		Shewana3_1617	0.40	-1.1
1,902,880	-		Shewana3_1617	0.40	+0.0
1,902,880	-		Shewana3_1617	0.40	-1.1
1,902,880	-		Shewana3_1617	0.40	-0.3
1,902,880	-		Shewana3_1617	0.40	-0.3
1,902,880	-		Shewana3_1617	0.40	-1.1
1,902,880	-		Shewana3_1617	0.40	+0.1
1,902,880	-		Shewana3_1617	0.40	-0.9
1,902,880	-		Shewana3_1617	0.40	-0.3
1,902,880	-		Shewana3_1617	0.40	-0.9
1,902,882	+		Shewana3_1617	0.40	+0.7
1,902,882	+		Shewana3_1617	0.40	-0.6
1,902,882	+		Shewana3_1617	0.40	+1.7
1,902,882	+		Shewana3_1617	0.40	-0.6
1,902,882	+		Shewana3_1617	0.40	-0.6
1,902,882	+		Shewana3_1617	0.40	-1.3
1,902,882	+		Shewana3_1617	0.40	-0.1
1,902,882	+		Shewana3_1617	0.40	+1.7
1,902,883	-		Shewana3_1617	0.40	+0.1
1,902,885	-		Shewana3_1617	0.41	-0.3
1,902,885	-		Shewana3_1617	0.41	-0.6
1,902,887	+		Shewana3_1617	0.41	-0.9
1,902,887	+		Shewana3_1617	0.41	-1.1
1,902,887	+		Shewana3_1617	0.41	+0.1
1,902,887	+		Shewana3_1617	0.41	-0.6
1,902,887	+		Shewana3_1617	0.41	+0.7
1,902,887	+		Shewana3_1617	0.41	+0.7
1,902,887	+		Shewana3_1617	0.41	+0.3
1,902,887	+		Shewana3_1617	0.41	+0.1
1,902,887	+		Shewana3_1617	0.41	+0.1
1,902,887	+		Shewana3_1617	0.41	+0.7
1,902,887	+		Shewana3_1617	0.41	-0.3
1,902,887	+		Shewana3_1617	0.41	-0.1
1,902,887	+		Shewana3_1617	0.41	+1.7
1,902,887	+		Shewana3_1617	0.41	+0.1
1,902,887	+		Shewana3_1617	0.41	+0.1
1,902,887	+		Shewana3_1617	0.41	+1.7
1,902,887	+		Shewana3_1617	0.41	+0.7
1,902,889	+		Shewana3_1617	0.41	-0.1
1,902,889	+		Shewana3_1617	0.41	-1.0
1,902,889	+		Shewana3_1617	0.41	+1.7
1,902,889	+		Shewana3_1617	0.41	+0.1
1,902,889	+		Shewana3_1617	0.41	+0.2
1,902,889	+		Shewana3_1617	0.41	+0.7
1,902,889	+		Shewana3_1617	0.41	-0.9
1,902,890	-		Shewana3_1617	0.41	-1.5
1,902,890	-		Shewana3_1617	0.41	+1.7
1,902,890	-		Shewana3_1617	0.41	+0.7
1,902,890	-		Shewana3_1617	0.41	+0.1
1,902,895	-		Shewana3_1617	0.42	+1.7
1,902,895	-		Shewana3_1617	0.42	+1.7
1,902,895	-		Shewana3_1617	0.42	+0.7
1,902,895	-		Shewana3_1617	0.42	+0.7
1,902,895	-		Shewana3_1617	0.42	+2.7
1,902,895	-		Shewana3_1617	0.42	-0.9
1,902,895	-		Shewana3_1617	0.42	-0.4
1,902,895	-		Shewana3_1617	0.42	-0.1
1,902,895	-		Shewana3_1617	0.42	-2.8
1,902,895	-		Shewana3_1617	0.42	-1.5
1,902,895	-		Shewana3_1617	0.42	-0.5
1,902,895	-		Shewana3_1617	0.42	-1.5
1,902,895	-		Shewana3_1617	0.42	-0.3
1,902,895	-		Shewana3_1617	0.42	+1.7
1,902,897	-		Shewana3_1617	0.42	+0.4
1,902,897	-		Shewana3_1617	0.42	-0.3
1,902,897	-		Shewana3_1617	0.42	-0.8
1,902,897	-		Shewana3_1617	0.42	-2.0
1,902,897	-		Shewana3_1617	0.42	-2.2
1,902,897	-		Shewana3_1617	0.42	+0.3
1,902,897	-		Shewana3_1617	0.42	-0.9
1,902,926	-		Shewana3_1617	0.45	-1.2
1,902,932	-		Shewana3_1617	0.46	-0.5
1,903,022	+		Shewana3_1617	0.57	-2.5
1,903,022	+		Shewana3_1617	0.57	+1.7
1,903,030	-		Shewana3_1617	0.58	-1.3
1,903,039	+		Shewana3_1617	0.59	-0.2
1,903,047	-		Shewana3_1617	0.60	-1.6
1,903,049	+		Shewana3_1617	0.60	+0.1
1,903,049	+		Shewana3_1617	0.60	-0.3
1,903,049	+		Shewana3_1617	0.60	-0.6
1,903,057	-		Shewana3_1617	0.61	+0.7
1,903,057	-		Shewana3_1617	0.61	+0.7
1,903,057	-		Shewana3_1617	0.61	-1.5
1,903,057	-		Shewana3_1617	0.61	+0.7
1,903,057	-		Shewana3_1617	0.61	+0.9
1,903,057	-		Shewana3_1617	0.61	-0.8
1,903,083	-		Shewana3_1617	0.64	+1.7
1,903,101	+		Shewana3_1617	0.66	-0.9
1,903,188	-		Shewana3_1617	0.77	-1.3
1,903,239	+		Shewana3_1617	0.83	+1.7
1,903,250	+		Shewana3_1617	0.84	+0.6
1,903,313	+				-1.9
1,903,321	-				+0.7
1,903,321	-				+0.1
1,903,336	+				-0.1
1,903,336	+				+0.4
1,903,336	+				-0.9
1,903,336	+				-2.2
1,903,336	+				-2.8
1,903,336	+				-2.1
1,903,336	+				-0.8
1,903,336	+				-2.4
1,903,336	+				-0.3
1,903,336	+				+0.1
1,903,341	+				-2.9
1,903,344	-				+1.7
1,903,344	-				+0.1
1,903,344	-				-0.1
1,903,354	-				-0.3
1,903,378	-				+0.7
1,903,387	+				-1.5
1,903,395	-				+0.1
1,903,432	-				+0.2
1,903,432	-				-1.1
1,903,496	-				-0.2
1,903,501	-				-0.6
1,903,679	-				+1.7
1,903,778	-		Shewana3_1618	0.10	+1.7
1,903,804	+		Shewana3_1618	0.14	+2.0
1,903,907	+		Shewana3_1618	0.31	-1.9
1,903,909	-		Shewana3_1618	0.31	+0.1
1,903,937	+		Shewana3_1618	0.35	-2.8
1,903,945	-		Shewana3_1618	0.37	+1.7
1,903,963	+		Shewana3_1618	0.39	+1.7
1,903,971	-		Shewana3_1618	0.41	+1.1
1,903,999	+		Shewana3_1618	0.45	-1.2
1,904,007	-		Shewana3_1618	0.46	+0.5
1,904,325	+				+0.1