Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1615

Experiment: 5-Hydroxymethylfurfural 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	5-Hydroxymethylfurfural 5 mM
1,898,901	+				+1.7
1,898,943	+				+0.7
1,898,950	-				+1.1
1,898,951	-				+1.7
1,898,952	-				+0.1
1,898,988	-				+1.0
1,899,065	-				+0.1
1,899,149	-				+1.9
1,899,196	+				-0.6
1,899,204	-				+0.1
1,899,291	+		Shewana3_1614	0.11	+0.7
1,899,292	-		Shewana3_1614	0.11	+1.7
1,899,448	+		Shewana3_1614	0.53	-3.1
1,899,503	-		Shewana3_1614	0.67	+0.1
1,899,568	+		Shewana3_1614	0.85	-0.9
1,899,710	+				-0.4
1,899,710	+				-0.9
1,899,723	-				-0.5
1,899,815	+				+1.7
1,899,915	+		Shewana3_1615	0.13	-0.6
1,899,990	+		Shewana3_1615	0.40	+0.1
1,900,089	+		Shewana3_1615	0.76	+1.7
1,900,089	+		Shewana3_1615	0.76	-0.5
1,900,097	-		Shewana3_1615	0.79	-0.3
1,900,097	-		Shewana3_1615	0.79	+0.6
1,900,097	-		Shewana3_1615	0.79	-1.2
1,900,100	+		Shewana3_1615	0.80	+0.7
1,900,108	-		Shewana3_1615	0.83	-0.9
1,900,118	-		Shewana3_1615	0.86	-0.3
1,900,138	+				-0.6
1,900,169	-				-0.4
1,900,169	-				-1.2
1,900,312	-				+0.7
1,900,334	-				-0.3
1,900,351	+				+0.7
1,900,351	+				+0.1
1,900,351	+				+0.1
1,900,351	+				+1.7
1,900,351	+				+0.1
1,900,359	-				-0.3
1,900,359	-				+0.7
1,900,359	-				-0.9
1,900,359	-				+1.7
1,900,386	-				-1.6
1,900,400	+				+1.7
1,900,400	+				+1.7
1,900,408	-				-0.3
1,900,408	-				+1.7
1,900,449	-				+0.7
1,900,456	+				+1.7
1,900,464	-				+1.7
1,900,464	-				-0.6
1,900,464	-				+0.7
1,900,475	+				-1.3
1,900,483	-				-1.0
1,900,511	+				+1.7
1,900,511	+				+0.1
1,900,511	+				-2.8
1,900,511	+				-0.3
1,900,511	+				-1.0
1,900,511	+				-0.8
1,900,519	-				-0.9
1,900,519	-				-0.9
1,900,519	-				-0.5
1,900,519	-				+0.7
1,900,524	-				-1.3
1,900,543	+				-0.1
1,900,544	-				-1.3
1,900,553	+				+1.7
1,900,553	+				+0.1
1,900,553	+				+0.7
1,900,553	+				+1.7
1,900,553	+				+1.7
1,900,553	+				+0.1
1,900,553	+				+1.4
1,900,553	+				-1.4
1,900,553	+				-0.1
1,900,553	+				+0.1
1,900,553	+				-0.6
1,900,553	+				-0.3
1,900,553	+				-0.6
1,900,553	+				+1.7
1,900,553	+				-0.9
1,900,555	-				-0.6
1,900,561	-				-1.3
1,900,561	-				+1.7
1,900,561	-				+1.7
1,900,561	-				+0.7
1,900,561	-				+0.1
1,900,561	-				+0.1
1,900,561	-				-0.3
1,900,561	-				-0.9
1,900,561	-				+0.1
1,900,561	-				-1.2
1,900,561	-				+1.7
1,900,561	-				+1.0
1,900,561	-				-0.0
1,900,561	-				+0.5
1,900,561	-				+0.1
1,900,561	-				-1.0
1,900,561	-				+1.1
1,900,561	-				+0.1
1,900,561	-				+0.7
1,900,561	-				+0.7
1,900,561	-				+0.6
1,900,625	+				-1.5
1,900,633	-				+0.1
1,900,633	-				+0.9
1,900,667	-				+1.7
1,900,680	-				-0.9
1,900,680	-				+0.7
1,900,783	+				+3.3
1,900,783	+				+0.4
1,900,788	+				-1.8
1,900,788	+				-1.9
1,900,788	+				+0.1
1,900,788	+				-0.8
1,900,788	+				-0.9
1,900,788	+				-1.3
1,900,791	-				+1.7
1,900,791	-				+1.7
1,900,791	-				+0.1
1,900,791	-				+0.7
1,900,796	-				-1.3
1,900,796	-				+1.7
1,900,796	-				-1.3
1,900,796	-				+0.7
1,900,798	+				-0.8
1,900,798	+				+0.8
1,900,798	+				-1.3
1,900,799	+				-0.6
1,900,806	-				-0.6
1,900,807	-				-0.5
1,900,809	+				-1.5
1,900,809	+				-0.3
1,900,809	+				-0.6
1,900,817	-				+0.7
1,900,834	+				+1.7
1,900,861	+				+0.4
1,900,869	-				-0.3
1,900,869	-				+1.7
1,900,885	+				-0.3
1,900,945	+				-0.3
1,900,953	-				-0.6
1,901,010	+				-0.3
1,901,024	+				+0.7
1,901,089	+				+0.7
1,901,097	-				+0.7
1,901,097	-				+1.0
1,901,097	-				-1.5
1,901,100	+				+0.1
1,901,123	-				+0.7
1,901,133	-				-1.1
1,901,133	-				+1.1
1,901,139	+				-0.3
1,901,147	-				+1.7
1,901,147	-				-1.3
1,901,149	+				-0.6