Experiment: 5-Hydroxymethylfurfural 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1595 and Shewana3_1596 are separated by 231 nucleotides Shewana3_1596 and Shewana3_1597 are separated by 58 nucleotides Shewana3_1597 and Shewana3_1598 are separated by 10 nucleotides
Shewana3_1595: Shewana3_1595 - PKD domain-containing protein (RefSeq), at 1,871,397 to 1,874,243
_1595
Shewana3_1596: Shewana3_1596 - hypothetical protein (RefSeq), at 1,874,475 to 1,874,903
_1596
Shewana3_1597: Shewana3_1597 - hypothetical protein (RefSeq), at 1,874,962 to 1,875,858
_1597
Shewana3_1598: Shewana3_1598 - hypothetical protein (RefSeq), at 1,875,869 to 1,876,627
_1598
Position (kb) 1874
1875 Strain fitness (log2 ratio) -2
-1
0
1 at 1873.537 kb on + strand, within Shewana3_1595 at 1873.545 kb on + strand, within Shewana3_1595 at 1873.580 kb on + strand, within Shewana3_1595 at 1873.588 kb on - strand, within Shewana3_1595 at 1873.781 kb on + strand, within Shewana3_1595 at 1873.878 kb on + strand, within Shewana3_1595 at 1874.148 kb on - strand at 1874.462 kb on - strand at 1874.486 kb on + strand at 1874.487 kb on + strand at 1874.496 kb on - strand at 1875.573 kb on - strand, within Shewana3_1597 at 1875.827 kb on - strand at 1875.827 kb on - strand at 1875.827 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 5 mM remove 1,873,537 + Shewana3_1595 0.75 -0.9 1,873,545 + Shewana3_1595 0.75 -0.6 1,873,580 + Shewana3_1595 0.77 -1.1 1,873,588 - Shewana3_1595 0.77 +0.7 1,873,781 + Shewana3_1595 0.84 +0.2 1,873,878 + Shewana3_1595 0.87 +0.0 1,874,148 - -1.8 1,874,462 - +0.7 1,874,486 + +0.1 1,874,487 + -1.6 1,874,496 - +0.8 1,875,573 - Shewana3_1597 0.68 -1.1 1,875,827 - -0.8 1,875,827 - -0.1 1,875,827 - +0.3
Or see this region's nucleotide sequence