Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1550

Experiment: 5-Hydroxymethylfurfural 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1548 and Shewana3_1549 are separated by 486 nucleotidesShewana3_1549 and Shewana3_1550 are separated by 29 nucleotidesShewana3_1550 and Shewana3_1551 are separated by 56 nucleotides Shewana3_1548: Shewana3_1548 - hypothetical protein (RefSeq), at 1,804,215 to 1,804,649 _1548 Shewana3_1549: Shewana3_1549 - transposase (RefSeq), at 1,805,136 to 1,805,531 _1549 Shewana3_1550: Shewana3_1550 - integrase catalytic subunit (RefSeq), at 1,805,561 to 1,806,364 _1550 Shewana3_1551: Shewana3_1551 - phosphate acetyltransferase (RefSeq), at 1,806,421 to 1,808,574 _1551 Position (kb) 1805 1806 1807Strain fitness (log2 ratio) -1 0 1at 1805.071 kb on + strandat 1806.569 kb on - strandat 1806.576 kb on + strandat 1806.765 kb on + strand, within Shewana3_1551at 1806.782 kb on - strand, within Shewana3_1551at 1806.850 kb on - strand, within Shewana3_1551at 1807.351 kb on - strand, within Shewana3_1551

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Per-strain Table

Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 5 mM
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1,805,071 + -1.3
1,806,569 - -0.8
1,806,576 + -0.3
1,806,765 + Shewana3_1551 0.16 +0.7
1,806,782 - Shewana3_1551 0.17 +1.3
1,806,850 - Shewana3_1551 0.20 -0.0
1,807,351 - Shewana3_1551 0.43 -0.9

Or see this region's nucleotide sequence