Experiment: 5-Hydroxymethylfurfural 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1204 and Shewana3_1205 are separated by 35 nucleotides Shewana3_1205 and Shewana3_1206 are separated by 111 nucleotides Shewana3_1206 and Shewana3_1207 are separated by 31 nucleotides
Shewana3_1204: Shewana3_1204 - putative transporter, required for glycine and L-alanine utilization (from data) , at 1,408,934 to 1,409,575
_1204
Shewana3_1205: Shewana3_1205 - thiol peroxidase (atypical 2-Cys peroxiredoxin) (RefSeq), at 1,409,611 to 1,410,204
_1205
Shewana3_1206: Shewana3_1206 - MscS mechanosensitive ion channel (RefSeq), at 1,410,316 to 1,411,143
_1206
Shewana3_1207: Shewana3_1207 - OmpA/MotB domain-containing protein (RefSeq), at 1,411,175 to 1,411,750
_1207
Position (kb)
1409
1410
1411 Strain fitness (log2 ratio)
-2
-1
0
1 at 1408.786 kb on + strand at 1409.087 kb on - strand, within Shewana3_1204 at 1409.225 kb on + strand, within Shewana3_1204 at 1409.417 kb on + strand, within Shewana3_1204 at 1409.425 kb on - strand, within Shewana3_1204 at 1409.463 kb on + strand, within Shewana3_1204 at 1409.471 kb on - strand, within Shewana3_1204 at 1409.475 kb on + strand, within Shewana3_1204 at 1409.475 kb on + strand, within Shewana3_1204 at 1409.657 kb on + strand at 1409.835 kb on - strand, within Shewana3_1205 at 1409.972 kb on + strand, within Shewana3_1205 at 1410.046 kb on - strand, within Shewana3_1205 at 1410.145 kb on + strand at 1410.235 kb on - strand at 1410.235 kb on - strand at 1410.247 kb on - strand at 1410.248 kb on - strand at 1410.428 kb on + strand, within Shewana3_1206 at 1410.436 kb on - strand, within Shewana3_1206 at 1410.443 kb on + strand, within Shewana3_1206 at 1410.471 kb on + strand, within Shewana3_1206 at 1410.498 kb on + strand, within Shewana3_1206 at 1410.506 kb on - strand, within Shewana3_1206 at 1410.506 kb on - strand, within Shewana3_1206 at 1410.506 kb on - strand, within Shewana3_1206 at 1410.587 kb on + strand, within Shewana3_1206 at 1410.595 kb on - strand, within Shewana3_1206 at 1410.693 kb on + strand at 1410.798 kb on + strand, within Shewana3_1206 at 1410.798 kb on - strand, within Shewana3_1206 at 1410.798 kb on - strand, within Shewana3_1206 at 1410.826 kb on - strand, within Shewana3_1206 at 1410.853 kb on + strand, within Shewana3_1206 at 1410.942 kb on - strand, within Shewana3_1206 at 1410.942 kb on - strand, within Shewana3_1206 at 1410.952 kb on + strand, within Shewana3_1206 at 1410.955 kb on - strand, within Shewana3_1206 at 1410.990 kb on + strand, within Shewana3_1206 at 1411.008 kb on - strand, within Shewana3_1206 at 1411.101 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 5 mM remove 1,408,786 + +0.6 1,409,087 - Shewana3_1204 0.24 -0.2 1,409,225 + Shewana3_1204 0.45 -0.0 1,409,417 + Shewana3_1204 0.75 -0.3 1,409,425 - Shewana3_1204 0.76 +1.6 1,409,463 + Shewana3_1204 0.82 +0.1 1,409,471 - Shewana3_1204 0.84 +0.0 1,409,475 + Shewana3_1204 0.84 +0.7 1,409,475 + Shewana3_1204 0.84 +0.8 1,409,657 + +0.6 1,409,835 - Shewana3_1205 0.38 +0.8 1,409,972 + Shewana3_1205 0.61 +0.1 1,410,046 - Shewana3_1205 0.73 +0.4 1,410,145 + +0.3 1,410,235 - -0.6 1,410,235 - -2.0 1,410,247 - +0.7 1,410,248 - +0.0 1,410,428 + Shewana3_1206 0.14 +1.6 1,410,436 - Shewana3_1206 0.14 +0.6 1,410,443 + Shewana3_1206 0.15 +1.6 1,410,471 + Shewana3_1206 0.19 +1.6 1,410,498 + Shewana3_1206 0.22 +0.6 1,410,506 - Shewana3_1206 0.23 +0.5 1,410,506 - Shewana3_1206 0.23 -0.2 1,410,506 - Shewana3_1206 0.23 +0.4 1,410,587 + Shewana3_1206 0.33 -1.0 1,410,595 - Shewana3_1206 0.34 +0.5 1,410,693 + +0.6 1,410,798 + Shewana3_1206 0.58 +0.6 1,410,798 - Shewana3_1206 0.58 +1.0 1,410,798 - Shewana3_1206 0.58 +0.3 1,410,826 - Shewana3_1206 0.62 +0.3 1,410,853 + Shewana3_1206 0.65 +0.0 1,410,942 - Shewana3_1206 0.76 +0.0 1,410,942 - Shewana3_1206 0.76 +0.4 1,410,952 + Shewana3_1206 0.77 +0.6 1,410,955 - Shewana3_1206 0.77 -0.5 1,410,990 + Shewana3_1206 0.81 +1.6 1,411,008 - Shewana3_1206 0.84 +0.6 1,411,101 - +0.4
Or see this region's nucleotide sequence