Experiment: 5-Hydroxymethylfurfural 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1144 and Shewana3_1145 are separated by 106 nucleotides Shewana3_1145 and Shewana3_1146 are separated by 129 nucleotides Shewana3_1146 and Shewana3_1147 are separated by 99 nucleotides Shewana3_1147 and Shewana3_1148 overlap by 4 nucleotides
Shewana3_1144: Shewana3_1144 - peptidase S41 (RefSeq), at 1,349,390 to 1,352,671
_1144
Shewana3_1145: Shewana3_1145 - hypothetical protein (RefSeq), at 1,352,778 to 1,353,200
_1145
Shewana3_1146: Shewana3_1146 - OsmC family protein (RefSeq), at 1,353,330 to 1,353,767
_1146
Shewana3_1147: Shewana3_1147 - hypothetical protein (RefSeq), at 1,353,867 to 1,354,217
_1147
Shewana3_1148: Shewana3_1148 - PepSY-associated TM helix domain-containing protein (RefSeq), at 1,354,214 to 1,355,896
_1148
Position (kb) 1353
1354 Strain fitness (log2 ratio) -1
0
1 at 1352.420 kb on + strand at 1352.493 kb on + strand at 1352.521 kb on - strand at 1352.700 kb on + strand at 1352.835 kb on - strand, within Shewana3_1145 at 1352.835 kb on - strand, within Shewana3_1145 at 1352.869 kb on + strand, within Shewana3_1145 at 1352.941 kb on + strand, within Shewana3_1145 at 1352.983 kb on + strand, within Shewana3_1145 at 1353.509 kb on + strand, within Shewana3_1146 at 1353.581 kb on - strand, within Shewana3_1146 at 1353.797 kb on - strand at 1353.841 kb on + strand at 1353.892 kb on + strand at 1353.897 kb on + strand at 1354.022 kb on - strand, within Shewana3_1147 at 1354.165 kb on - strand, within Shewana3_1147 at 1354.229 kb on + strand at 1354.410 kb on - strand, within Shewana3_1148 at 1354.570 kb on + strand, within Shewana3_1148 at 1354.578 kb on - strand, within Shewana3_1148
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 5 mM remove 1,352,420 + +0.0 1,352,493 + -0.1 1,352,521 - -0.4 1,352,700 + -0.1 1,352,835 - Shewana3_1145 0.13 +0.9 1,352,835 - Shewana3_1145 0.13 +0.5 1,352,869 + Shewana3_1145 0.22 +0.2 1,352,941 + Shewana3_1145 0.39 -0.4 1,352,983 + Shewana3_1145 0.48 -0.6 1,353,509 + Shewana3_1146 0.41 +0.1 1,353,581 - Shewana3_1146 0.57 +0.3 1,353,797 - -1.0 1,353,841 + +0.6 1,353,892 + +0.6 1,353,897 + +1.6 1,354,022 - Shewana3_1147 0.44 +0.8 1,354,165 - Shewana3_1147 0.85 +0.1 1,354,229 + +1.6 1,354,410 - Shewana3_1148 0.12 +0.9 1,354,570 + Shewana3_1148 0.21 +0.6 1,354,578 - Shewana3_1148 0.22 +0.8
Or see this region's nucleotide sequence