Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1104

Experiment: 5-Hydroxymethylfurfural 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	5-Hydroxymethylfurfural 5 mM
1,296,371	+		Shewana3_1103	0.40	+0.6
1,296,436	+		Shewana3_1103	0.47	-2.1
1,296,441	+		Shewana3_1103	0.48	-0.4
1,296,441	+		Shewana3_1103	0.48	-1.0
1,296,449	-		Shewana3_1103	0.49	-0.0
1,296,595	+		Shewana3_1103	0.65	-0.8
1,296,595	+		Shewana3_1103	0.65	+1.6
1,296,595	+		Shewana3_1103	0.65	+1.6
1,296,617	-		Shewana3_1103	0.68	-2.1
1,296,657	+		Shewana3_1103	0.72	-0.4
1,296,691	+		Shewana3_1103	0.76	-1.1
1,296,691	+		Shewana3_1103	0.76	-1.0
1,296,699	-		Shewana3_1103	0.77	+1.6
1,296,702	+		Shewana3_1103	0.78	-0.4
1,296,733	-		Shewana3_1103	0.81	+2.0
1,296,733	-		Shewana3_1103	0.81	-1.6
1,296,783	+		Shewana3_1103	0.87	-0.0
1,296,794	+		Shewana3_1103	0.88	-0.2
1,296,820	-				-0.0
1,296,850	+				-2.9
1,296,850	+				+0.6
1,296,850	+				-3.0
1,297,114	+				+1.6
1,297,120	+				-1.0
1,297,128	+				-1.0
1,297,136	-				-2.0
1,297,216	+				-2.2
1,297,270	-				-0.2
1,297,294	-				-1.0
1,297,298	+				-0.6
1,297,313	+				-0.9
1,297,337	+				-0.4
1,297,337	+				-0.0
1,297,338	+				-0.4
1,297,338	+				+0.6
1,297,346	-				-0.1
1,297,407	-				-1.1
1,297,509	-		Shewana3_1104	0.12	-0.3
1,297,659	-		Shewana3_1104	0.21	-0.1
1,297,800	+		Shewana3_1104	0.29	-1.1
1,297,808	-		Shewana3_1104	0.30	-2.8
1,297,975	+		Shewana3_1104	0.40	-2.0
1,298,024	-		Shewana3_1104	0.43	-1.2
1,298,049	+		Shewana3_1104	0.44	-1.5
1,298,049	+		Shewana3_1104	0.44	+0.4
1,298,143	-		Shewana3_1104	0.50	-0.6
1,298,143	-		Shewana3_1104	0.50	-1.4
1,298,279	-		Shewana3_1104	0.58	-1.2
1,298,447	-		Shewana3_1104	0.68	-0.4
1,298,487	-		Shewana3_1104	0.71	-1.3
1,298,499	+		Shewana3_1104	0.71	-0.9
1,298,507	-		Shewana3_1104	0.72	+0.9
1,298,534	+		Shewana3_1104	0.74	-2.6
1,298,558	+		Shewana3_1104	0.75	-0.0
1,298,703	-		Shewana3_1104	0.84	-0.2
1,299,328	+		Shewana3_1105	0.24	-0.8
1,299,334	+		Shewana3_1105	0.24	-2.3
1,299,385	-		Shewana3_1105	0.29	+0.6
1,299,394	+		Shewana3_1105	0.30	-0.1
1,299,809	-		Shewana3_1105	0.74	+0.6
1,299,809	-		Shewana3_1105	0.74	-0.2