Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1017
Experiment: 5-Hydroxymethylfurfural 5 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | 5-Hydroxymethylfurfural 5 mM |
---|---|---|---|---|---|
remove | |||||
1,187,594 | + | Shewana3_1016 | 0.16 | +0.2 | |
1,187,672 | - | Shewana3_1016 | 0.25 | +0.2 | |
1,187,751 | - | Shewana3_1016 | 0.35 | -0.7 | |
1,187,913 | + | Shewana3_1016 | 0.54 | +0.5 | |
1,188,358 | + | -0.3 | |||
1,188,358 | + | +0.4 | |||
1,188,444 | + | -1.8 | |||
1,188,478 | + | -0.1 | |||
1,188,493 | - | -1.6 | |||
1,188,655 | - | Shewana3_1017 | 0.25 | +1.5 | |
1,188,686 | - | Shewana3_1017 | 0.31 | -1.9 | |
1,189,501 | - | Shewana3_1018 | 0.35 | +0.1 | |
1,189,622 | - | Shewana3_1018 | 0.58 | -2.4 |
Or see this region's nucleotide sequence