Experiment: 5-Hydroxymethylfurfural 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0837 and Shewana3_0838 are separated by 236 nucleotides Shewana3_0838 and Shewana3_0839 are separated by 49 nucleotides
Shewana3_0837: Shewana3_0837 - NAD-dependent epimerase/dehydratase (RefSeq), at 969,774 to 970,709
_0837
Shewana3_0838: Shewana3_0838 - MerR family transcriptional regulator (RefSeq), at 970,946 to 971,383
_0838
Shewana3_0839: Shewana3_0839 - AFG1 family ATPase (RefSeq), at 971,433 to 972,635
_0839
Position (kb) 970
971
972 Strain fitness (log2 ratio) -2
-1
0
1
2 at 969.968 kb on + strand, within Shewana3_0837 at 970.026 kb on + strand, within Shewana3_0837 at 970.098 kb on - strand, within Shewana3_0837 at 970.231 kb on - strand, within Shewana3_0837 at 970.276 kb on + strand, within Shewana3_0837 at 970.386 kb on + strand, within Shewana3_0837 at 970.474 kb on + strand, within Shewana3_0837 at 970.535 kb on - strand, within Shewana3_0837 at 970.545 kb on + strand, within Shewana3_0837 at 970.622 kb on + strand at 970.659 kb on + strand at 970.730 kb on - strand at 970.761 kb on + strand at 970.761 kb on + strand at 970.769 kb on - strand at 971.309 kb on - strand, within Shewana3_0838 at 971.571 kb on - strand, within Shewana3_0839 at 971.617 kb on + strand, within Shewana3_0839 at 971.655 kb on + strand, within Shewana3_0839 at 971.663 kb on - strand, within Shewana3_0839 at 971.838 kb on + strand, within Shewana3_0839 at 971.846 kb on - strand, within Shewana3_0839 at 971.863 kb on + strand, within Shewana3_0839 at 971.971 kb on - strand, within Shewana3_0839 at 972.070 kb on + strand, within Shewana3_0839 at 972.070 kb on + strand, within Shewana3_0839 at 972.078 kb on - strand, within Shewana3_0839 at 972.078 kb on - strand, within Shewana3_0839 at 972.295 kb on + strand, within Shewana3_0839 at 972.318 kb on + strand, within Shewana3_0839
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 5 mM remove 969,968 + Shewana3_0837 0.21 +0.0 970,026 + Shewana3_0837 0.27 -0.3 970,098 - Shewana3_0837 0.35 -2.5 970,231 - Shewana3_0837 0.49 -1.4 970,276 + Shewana3_0837 0.54 -0.1 970,386 + Shewana3_0837 0.65 -1.1 970,474 + Shewana3_0837 0.75 -0.3 970,535 - Shewana3_0837 0.81 -0.0 970,545 + Shewana3_0837 0.82 +0.1 970,622 + -0.4 970,659 + -0.5 970,730 - -0.2 970,761 + +0.4 970,761 + +2.1 970,769 - -1.5 971,309 - Shewana3_0838 0.83 -0.7 971,571 - Shewana3_0839 0.11 -0.0 971,617 + Shewana3_0839 0.15 -0.6 971,655 + Shewana3_0839 0.18 -1.3 971,663 - Shewana3_0839 0.19 +0.2 971,838 + Shewana3_0839 0.34 -1.0 971,846 - Shewana3_0839 0.34 +0.6 971,863 + Shewana3_0839 0.36 +0.3 971,971 - Shewana3_0839 0.45 -0.5 972,070 + Shewana3_0839 0.53 -1.6 972,070 + Shewana3_0839 0.53 +1.0 972,078 - Shewana3_0839 0.54 -0.0 972,078 - Shewana3_0839 0.54 -0.1 972,295 + Shewana3_0839 0.72 -0.1 972,318 + Shewana3_0839 0.74 -0.1
Or see this region's nucleotide sequence