Experiment: 5-Hydroxymethylfurfural 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0752 and Shewana3_0753 are separated by 83 nucleotides Shewana3_0753 and Shewana3_0754 are separated by 199 nucleotides Shewana3_0754 and Shewana3_0755 are separated by 117 nucleotides Shewana3_0755 and Shewana3_0756 are separated by 72 nucleotides
Shewana3_0752: Shewana3_0752 - putative manganese transporter (RefSeq), at 872,127 to 873,413
_0752
Shewana3_0753: Shewana3_0753 - membrane-flanked domain-containing protein (RefSeq), at 873,497 to 874,039
_0753
Shewana3_0754: Shewana3_0754 - TonB-dependent receptor (RefSeq), at 874,239 to 876,824
_0754
Shewana3_0755: Shewana3_0755 - glutathione S-transferase domain-containing protein (RefSeq), at 876,942 to 877,571
_0755
Shewana3_0756: Shewana3_0756 - hypothetical protein (RefSeq), at 877,644 to 878,144
_0756
Position (kb) 874
875
876
877 Strain fitness (log2 ratio) -2
-1
0
1 at 873.261 kb on + strand, within Shewana3_0752 at 873.452 kb on + strand at 873.526 kb on - strand at 873.555 kb on + strand, within Shewana3_0753 at 873.686 kb on - strand, within Shewana3_0753 at 873.957 kb on - strand, within Shewana3_0753 at 874.080 kb on - strand at 874.254 kb on + strand at 874.264 kb on + strand at 874.303 kb on + strand at 874.317 kb on + strand at 874.354 kb on - strand at 874.378 kb on + strand at 874.388 kb on - strand at 874.539 kb on + strand, within Shewana3_0754 at 874.775 kb on + strand, within Shewana3_0754 at 874.782 kb on - strand, within Shewana3_0754 at 875.159 kb on + strand, within Shewana3_0754 at 875.206 kb on - strand, within Shewana3_0754 at 875.306 kb on + strand, within Shewana3_0754 at 875.386 kb on + strand, within Shewana3_0754 at 875.399 kb on + strand, within Shewana3_0754 at 875.722 kb on - strand, within Shewana3_0754 at 875.790 kb on - strand, within Shewana3_0754 at 876.098 kb on + strand, within Shewana3_0754 at 876.154 kb on + strand, within Shewana3_0754 at 876.346 kb on + strand, within Shewana3_0754 at 876.354 kb on - strand, within Shewana3_0754 at 876.354 kb on - strand, within Shewana3_0754 at 876.457 kb on - strand, within Shewana3_0754 at 876.596 kb on - strand at 877.040 kb on + strand, within Shewana3_0755 at 877.319 kb on + strand, within Shewana3_0755 at 877.319 kb on + strand, within Shewana3_0755 at 877.327 kb on - strand, within Shewana3_0755 at 877.327 kb on - strand, within Shewana3_0755 at 877.329 kb on + strand, within Shewana3_0755 at 877.337 kb on - strand, within Shewana3_0755 at 877.565 kb on + strand at 877.751 kb on + strand, within Shewana3_0756 at 877.751 kb on + strand, within Shewana3_0756 at 877.814 kb on - strand, within Shewana3_0756
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 5 mM remove 873,261 + Shewana3_0752 0.88 -0.1 873,452 + -0.0 873,526 - +0.2 873,555 + Shewana3_0753 0.11 -1.5 873,686 - Shewana3_0753 0.35 +0.5 873,957 - Shewana3_0753 0.85 -1.1 874,080 - -1.2 874,254 + -0.2 874,264 + +0.1 874,303 + -0.1 874,317 + -0.2 874,354 - -1.0 874,378 + -0.1 874,388 - -0.3 874,539 + Shewana3_0754 0.12 -0.4 874,775 + Shewana3_0754 0.21 -0.7 874,782 - Shewana3_0754 0.21 +0.9 875,159 + Shewana3_0754 0.36 -2.1 875,206 - Shewana3_0754 0.37 -0.4 875,306 + Shewana3_0754 0.41 -0.2 875,386 + Shewana3_0754 0.44 +0.4 875,399 + Shewana3_0754 0.45 -0.6 875,722 - Shewana3_0754 0.57 -0.2 875,790 - Shewana3_0754 0.60 -1.1 876,098 + Shewana3_0754 0.72 -1.2 876,154 + Shewana3_0754 0.74 -0.4 876,346 + Shewana3_0754 0.81 +0.0 876,354 - Shewana3_0754 0.82 -0.4 876,354 - Shewana3_0754 0.82 -2.2 876,457 - Shewana3_0754 0.86 -0.1 876,596 - -0.4 877,040 + Shewana3_0755 0.16 -0.5 877,319 + Shewana3_0755 0.60 -0.3 877,319 + Shewana3_0755 0.60 -0.2 877,327 - Shewana3_0755 0.61 -0.8 877,327 - Shewana3_0755 0.61 +1.3 877,329 + Shewana3_0755 0.61 +0.2 877,337 - Shewana3_0755 0.63 -0.8 877,565 + +0.1 877,751 + Shewana3_0756 0.21 -0.4 877,751 + Shewana3_0756 0.21 -1.5 877,814 - Shewana3_0756 0.34 +0.1
Or see this region's nucleotide sequence