Experiment: 5-Hydroxymethylfurfural 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0752 and Shewana3_0753 are separated by 83 nucleotides Shewana3_0753 and Shewana3_0754 are separated by 199 nucleotides
Shewana3_0752: Shewana3_0752 - putative manganese transporter (RefSeq), at 872,127 to 873,413
_0752
Shewana3_0753: Shewana3_0753 - membrane-flanked domain-containing protein (RefSeq), at 873,497 to 874,039
_0753
Shewana3_0754: Shewana3_0754 - TonB-dependent receptor (RefSeq), at 874,239 to 876,824
_0754
Position (kb) 873
874
875 Strain fitness (log2 ratio) -1
0
1 at 872.640 kb on - strand, within Shewana3_0752 at 872.678 kb on - strand, within Shewana3_0752 at 872.915 kb on - strand, within Shewana3_0752 at 873.077 kb on + strand, within Shewana3_0752 at 873.083 kb on - strand, within Shewana3_0752 at 873.143 kb on - strand, within Shewana3_0752 at 873.146 kb on + strand, within Shewana3_0752 at 873.261 kb on + strand, within Shewana3_0752 at 873.452 kb on + strand at 873.526 kb on - strand at 873.555 kb on + strand, within Shewana3_0753 at 873.686 kb on - strand, within Shewana3_0753 at 873.957 kb on - strand, within Shewana3_0753 at 874.080 kb on - strand at 874.254 kb on + strand at 874.264 kb on + strand at 874.303 kb on + strand at 874.317 kb on + strand at 874.354 kb on - strand at 874.378 kb on + strand at 874.388 kb on - strand at 874.539 kb on + strand, within Shewana3_0754 at 874.775 kb on + strand, within Shewana3_0754 at 874.782 kb on - strand, within Shewana3_0754
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 5 mM remove 872,640 - Shewana3_0752 0.40 -0.1 872,678 - Shewana3_0752 0.43 +0.0 872,915 - Shewana3_0752 0.61 -0.1 873,077 + Shewana3_0752 0.74 -1.6 873,083 - Shewana3_0752 0.74 -0.7 873,143 - Shewana3_0752 0.79 +0.2 873,146 + Shewana3_0752 0.79 +0.3 873,261 + Shewana3_0752 0.88 -0.1 873,452 + -0.0 873,526 - +0.2 873,555 + Shewana3_0753 0.11 -1.5 873,686 - Shewana3_0753 0.35 +0.5 873,957 - Shewana3_0753 0.85 -1.1 874,080 - -1.2 874,254 + -0.2 874,264 + +0.1 874,303 + -0.1 874,317 + -0.2 874,354 - -1.0 874,378 + -0.1 874,388 - -0.3 874,539 + Shewana3_0754 0.12 -0.4 874,775 + Shewana3_0754 0.21 -0.7 874,782 - Shewana3_0754 0.21 +0.9
Or see this region's nucleotide sequence