Experiment: 5-Hydroxymethylfurfural 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0614 and Shewana3_0615 overlap by 4 nucleotides Shewana3_0615 and Shewana3_0616 overlap by 20 nucleotides Shewana3_0616 and Shewana3_0617 are separated by 82 nucleotides
Shewana3_0614: Shewana3_0614 - ATPase domain-containing protein (RefSeq), at 719,821 to 721,149
_0614
Shewana3_0615: Shewana3_0615 - two component transcriptional regulator (RefSeq), at 721,146 to 721,820
_0615
Shewana3_0616: Shewana3_0616 - hypothetical protein (RefSeq), at 721,801 to 722,148
_0616
Shewana3_0617: Shewana3_0617 - cAMP-regulatory protein (RefSeq), at 722,231 to 722,866
_0617
Position (kb) 721
722 Strain fitness (log2 ratio) -2
-1
0
1 at 720.150 kb on + strand, within Shewana3_0614 at 720.374 kb on + strand, within Shewana3_0614 at 720.498 kb on - strand, within Shewana3_0614 at 720.531 kb on + strand, within Shewana3_0614 at 720.539 kb on - strand, within Shewana3_0614 at 720.729 kb on + strand, within Shewana3_0614 at 720.965 kb on - strand, within Shewana3_0614 at 721.116 kb on + strand at 721.231 kb on - strand, within Shewana3_0615 at 721.341 kb on - strand, within Shewana3_0615 at 721.436 kb on - strand, within Shewana3_0615 at 721.544 kb on + strand, within Shewana3_0615 at 721.559 kb on - strand, within Shewana3_0615 at 721.661 kb on + strand, within Shewana3_0615 at 721.683 kb on + strand, within Shewana3_0615 at 721.839 kb on + strand, within Shewana3_0616 at 721.852 kb on - strand, within Shewana3_0616 at 722.045 kb on + strand, within Shewana3_0616 at 722.231 kb on - strand at 722.711 kb on - strand, within Shewana3_0617
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 5 mM remove 720,150 + Shewana3_0614 0.25 -0.0 720,374 + Shewana3_0614 0.42 -0.2 720,498 - Shewana3_0614 0.51 -0.4 720,531 + Shewana3_0614 0.53 -0.4 720,539 - Shewana3_0614 0.54 -0.5 720,729 + Shewana3_0614 0.68 -0.8 720,965 - Shewana3_0614 0.86 +0.2 721,116 + -0.8 721,231 - Shewana3_0615 0.13 -0.8 721,341 - Shewana3_0615 0.29 -0.1 721,436 - Shewana3_0615 0.43 +0.1 721,544 + Shewana3_0615 0.59 -0.8 721,559 - Shewana3_0615 0.61 -0.7 721,661 + Shewana3_0615 0.76 -1.2 721,683 + Shewana3_0615 0.80 -0.5 721,839 + Shewana3_0616 0.11 -2.2 721,852 - Shewana3_0616 0.15 -1.3 722,045 + Shewana3_0616 0.70 -0.0 722,231 - -0.9 722,711 - Shewana3_0617 0.75 +0.5
Or see this region's nucleotide sequence