Experiment: 5-Hydroxymethylfurfural 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0578 and Shewana3_0579 are separated by 247 nucleotides Shewana3_0579 and Shewana3_0580 are separated by 107 nucleotides Shewana3_0580 and Shewana3_0581 are separated by 199 nucleotides Shewana3_0581 and Shewana3_0582 are separated by 248 nucleotides
Shewana3_0578: Shewana3_0578 - serine/threonine protein kinase (RefSeq), at 678,090 to 679,898
_0578
Shewana3_0579: Shewana3_0579 - hypothetical protein (RefSeq), at 680,146 to 680,484
_0579
Shewana3_0580: Shewana3_0580 - thiopurine S-methyltransferase (RefSeq), at 680,592 to 681,248
_0580
Shewana3_0581: Shewana3_0581 - BFD/(2Fe-2S)-binding domain-containing protein (RefSeq), at 681,448 to 681,639
_0581
Shewana3_0582: Shewana3_0582 - methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (RefSeq), at 681,888 to 683,462
_0582
Position (kb) 680
681
682 Strain fitness (log2 ratio) -2
-1
0
1 at 679.597 kb on + strand, within Shewana3_0578 at 679.597 kb on + strand, within Shewana3_0578 at 679.599 kb on + strand, within Shewana3_0578 at 679.607 kb on - strand, within Shewana3_0578 at 679.612 kb on + strand, within Shewana3_0578 at 680.138 kb on - strand at 680.268 kb on + strand, within Shewana3_0579 at 680.280 kb on + strand, within Shewana3_0579 at 680.473 kb on + strand at 680.481 kb on - strand at 680.502 kb on - strand at 680.909 kb on - strand, within Shewana3_0580 at 680.939 kb on + strand, within Shewana3_0580 at 680.947 kb on - strand, within Shewana3_0580 at 681.035 kb on - strand, within Shewana3_0580 at 681.575 kb on - strand, within Shewana3_0581 at 682.030 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 5 mM remove 679,597 + Shewana3_0578 0.83 -0.1 679,597 + Shewana3_0578 0.83 +0.4 679,599 + Shewana3_0578 0.83 +0.5 679,607 - Shewana3_0578 0.84 -1.2 679,612 + Shewana3_0578 0.84 -1.3 680,138 - -2.3 680,268 + Shewana3_0579 0.36 -0.7 680,280 + Shewana3_0579 0.40 -0.0 680,473 + -0.1 680,481 - -0.9 680,502 - -0.3 680,909 - Shewana3_0580 0.48 -0.9 680,939 + Shewana3_0580 0.53 -0.3 680,947 - Shewana3_0580 0.54 +0.2 681,035 - Shewana3_0580 0.67 +0.1 681,575 - Shewana3_0581 0.66 +0.4 682,030 + -0.6
Or see this region's nucleotide sequence