Experiment: 5-Hydroxymethylfurfural 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0430 and Shewana3_0431 are separated by 211 nucleotides Shewana3_0431 and Shewana3_0432 are separated by 69 nucleotides
Shewana3_0430: Shewana3_0430 - patatin (RefSeq), at 496,353 to 498,572
_0430
Shewana3_0431: Shewana3_0431 - peptidase M13 (RefSeq), at 498,784 to 500,826
_0431
Shewana3_0432: Shewana3_0432 - 2-deoxyglucose-6-phosphatase (RefSeq), at 500,896 to 501,552
_0432
Position (kb) 498
499
500
501 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 497.834 kb on + strand, within Shewana3_0430 at 497.882 kb on + strand, within Shewana3_0430 at 497.890 kb on - strand, within Shewana3_0430 at 497.897 kb on - strand, within Shewana3_0430 at 497.903 kb on + strand, within Shewana3_0430 at 497.904 kb on + strand, within Shewana3_0430 at 498.001 kb on - strand, within Shewana3_0430 at 498.015 kb on + strand, within Shewana3_0430 at 498.015 kb on + strand, within Shewana3_0430 at 498.034 kb on + strand, within Shewana3_0430 at 498.134 kb on - strand, within Shewana3_0430 at 498.135 kb on + strand, within Shewana3_0430 at 498.135 kb on + strand, within Shewana3_0430 at 498.396 kb on + strand at 498.432 kb on + strand at 498.440 kb on - strand at 498.442 kb on + strand at 498.452 kb on + strand at 499.215 kb on - strand, within Shewana3_0431 at 499.308 kb on + strand, within Shewana3_0431 at 499.308 kb on + strand, within Shewana3_0431 at 499.310 kb on + strand, within Shewana3_0431 at 499.310 kb on + strand, within Shewana3_0431 at 499.318 kb on - strand, within Shewana3_0431 at 499.318 kb on - strand, within Shewana3_0431 at 499.324 kb on + strand, within Shewana3_0431 at 499.558 kb on - strand, within Shewana3_0431 at 499.604 kb on + strand, within Shewana3_0431 at 499.725 kb on - strand, within Shewana3_0431 at 499.739 kb on + strand, within Shewana3_0431 at 500.187 kb on + strand, within Shewana3_0431 at 500.508 kb on - strand, within Shewana3_0431 at 500.585 kb on - strand, within Shewana3_0431 at 500.705 kb on + strand at 500.722 kb on + strand at 500.751 kb on - strand at 500.899 kb on + strand at 500.899 kb on + strand at 501.064 kb on - strand, within Shewana3_0432 at 501.124 kb on + strand, within Shewana3_0432 at 501.149 kb on + strand, within Shewana3_0432 at 501.157 kb on - strand, within Shewana3_0432 at 501.337 kb on - strand, within Shewana3_0432 at 501.582 kb on - strand at 501.784 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 5 mM remove 497,834 + Shewana3_0430 0.67 -0.3 497,882 + Shewana3_0430 0.69 -0.7 497,890 - Shewana3_0430 0.69 -2.3 497,897 - Shewana3_0430 0.70 -1.3 497,903 + Shewana3_0430 0.70 -0.6 497,904 + Shewana3_0430 0.70 -0.9 498,001 - Shewana3_0430 0.74 -1.5 498,015 + Shewana3_0430 0.75 -0.8 498,015 + Shewana3_0430 0.75 -0.7 498,034 + Shewana3_0430 0.76 -0.9 498,134 - Shewana3_0430 0.80 -3.5 498,135 + Shewana3_0430 0.80 -0.3 498,135 + Shewana3_0430 0.80 -0.2 498,396 + -0.2 498,432 + -0.4 498,440 - -0.5 498,442 + -1.1 498,452 + -0.6 499,215 - Shewana3_0431 0.21 +0.8 499,308 + Shewana3_0431 0.26 +0.3 499,308 + Shewana3_0431 0.26 +0.8 499,310 + Shewana3_0431 0.26 -0.8 499,310 + Shewana3_0431 0.26 +0.1 499,318 - Shewana3_0431 0.26 -0.9 499,318 - Shewana3_0431 0.26 +0.8 499,324 + Shewana3_0431 0.26 -0.1 499,558 - Shewana3_0431 0.38 +0.2 499,604 + Shewana3_0431 0.40 -0.4 499,725 - Shewana3_0431 0.46 +0.1 499,739 + Shewana3_0431 0.47 +0.7 500,187 + Shewana3_0431 0.69 +0.4 500,508 - Shewana3_0431 0.84 -0.7 500,585 - Shewana3_0431 0.88 +0.2 500,705 + +0.3 500,722 + +0.0 500,751 - -1.5 500,899 + +0.2 500,899 + +0.1 501,064 - Shewana3_0432 0.26 -0.4 501,124 + Shewana3_0432 0.35 -0.2 501,149 + Shewana3_0432 0.39 -1.4 501,157 - Shewana3_0432 0.40 -0.1 501,337 - Shewana3_0432 0.67 +0.2 501,582 - -0.0 501,784 + -0.8
Or see this region's nucleotide sequence