Experiment: 5-Hydroxymethylfurfural 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0092 and Shewana3_0093 are separated by 29 nucleotides Shewana3_0093 and Shewana3_0094 are separated by 43 nucleotides Shewana3_0094 and Shewana3_0095 are separated by 90 nucleotides
Shewana3_0092: Shewana3_0092 - integrase catalytic subunit (RefSeq), at 103,361 to 104,164
_0092
Shewana3_0093: Shewana3_0093 - transposase (RefSeq), at 104,194 to 104,589
_0093
Shewana3_0094: Shewana3_0094 - hypothetical protein (RefSeq), at 104,633 to 105,280
_0094
Shewana3_0095: Shewana3_0095 - hypothetical protein (RefSeq), at 105,371 to 107,278
_0095
Position (kb) 104
105
106 Strain fitness (log2 ratio) -1
0
1 at 103.851 kb on - strand, within Shewana3_0092 at 104.385 kb on - strand, within Shewana3_0093 at 104.783 kb on - strand, within Shewana3_0094 at 104.792 kb on + strand, within Shewana3_0094 at 104.843 kb on + strand, within Shewana3_0094 at 105.130 kb on - strand, within Shewana3_0094 at 105.369 kb on + strand at 105.411 kb on + strand at 105.569 kb on + strand, within Shewana3_0095 at 105.570 kb on + strand, within Shewana3_0095 at 105.570 kb on - strand, within Shewana3_0095 at 105.570 kb on - strand, within Shewana3_0095 at 105.674 kb on + strand, within Shewana3_0095 at 105.725 kb on + strand, within Shewana3_0095 at 105.733 kb on - strand, within Shewana3_0095 at 105.800 kb on - strand, within Shewana3_0095 at 105.818 kb on + strand, within Shewana3_0095 at 105.821 kb on - strand, within Shewana3_0095 at 105.867 kb on + strand, within Shewana3_0095 at 105.867 kb on + strand, within Shewana3_0095 at 105.875 kb on - strand, within Shewana3_0095 at 105.875 kb on - strand, within Shewana3_0095 at 105.875 kb on - strand, within Shewana3_0095 at 105.922 kb on + strand, within Shewana3_0095 at 105.970 kb on + strand, within Shewana3_0095 at 105.978 kb on - strand, within Shewana3_0095 at 105.978 kb on - strand, within Shewana3_0095 at 105.978 kb on - strand, within Shewana3_0095 at 106.070 kb on - strand, within Shewana3_0095 at 106.101 kb on - strand, within Shewana3_0095 at 106.236 kb on + strand, within Shewana3_0095 at 106.275 kb on - strand, within Shewana3_0095
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 5 mM remove 103,851 - Shewana3_0092 0.61 +0.1 104,385 - Shewana3_0093 0.48 -0.3 104,783 - Shewana3_0094 0.23 +0.0 104,792 + Shewana3_0094 0.25 -0.1 104,843 + Shewana3_0094 0.32 +0.2 105,130 - Shewana3_0094 0.77 -0.8 105,369 + -0.0 105,411 + -0.2 105,569 + Shewana3_0095 0.10 +0.2 105,570 + Shewana3_0095 0.10 -0.1 105,570 - Shewana3_0095 0.10 +0.2 105,570 - Shewana3_0095 0.10 -0.0 105,674 + Shewana3_0095 0.16 +0.2 105,725 + Shewana3_0095 0.19 +0.1 105,733 - Shewana3_0095 0.19 +0.3 105,800 - Shewana3_0095 0.22 -0.1 105,818 + Shewana3_0095 0.23 -0.1 105,821 - Shewana3_0095 0.24 +0.1 105,867 + Shewana3_0095 0.26 +0.0 105,867 + Shewana3_0095 0.26 +0.4 105,875 - Shewana3_0095 0.26 -0.3 105,875 - Shewana3_0095 0.26 -0.1 105,875 - Shewana3_0095 0.26 -0.3 105,922 + Shewana3_0095 0.29 +0.4 105,970 + Shewana3_0095 0.31 +0.6 105,978 - Shewana3_0095 0.32 +0.3 105,978 - Shewana3_0095 0.32 +0.0 105,978 - Shewana3_0095 0.32 +0.1 106,070 - Shewana3_0095 0.37 -0.2 106,101 - Shewana3_0095 0.38 +0.1 106,236 + Shewana3_0095 0.45 -0.3 106,275 - Shewana3_0095 0.47 -0.2
Or see this region's nucleotide sequence