Experiment: 5-Hydroxymethylfurfural 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt trkA and Shewana3_0033 are separated by 15 nucleotides Shewana3_0033 and Shewana3_0034 overlap by 1 nucleotides Shewana3_0034 and def are separated by 15 nucleotides
Shewana3_0032: trkA - potassium transporter peripheral membrane component (RefSeq), at 38,658 to 40,067
trkA
Shewana3_0033: Shewana3_0033 - sun protein (RefSeq), at 40,083 to 41,372
_0033
Shewana3_0034: Shewana3_0034 - methionyl-tRNA formyltransferase (RefSeq), at 41,372 to 42,328
_0034
Shewana3_0035: def - peptide deformylase (RefSeq), at 42,344 to 42,850
def
Position (kb) 40
41
42 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 40.163 kb on - strand at 40.189 kb on - strand at 40.411 kb on + strand, within Shewana3_0033 at 40.414 kb on - strand, within Shewana3_0033 at 40.419 kb on - strand, within Shewana3_0033 at 40.419 kb on - strand, within Shewana3_0033 at 40.443 kb on + strand, within Shewana3_0033 at 40.451 kb on - strand, within Shewana3_0033 at 40.583 kb on + strand, within Shewana3_0033 at 40.677 kb on + strand, within Shewana3_0033 at 40.685 kb on - strand, within Shewana3_0033 at 40.772 kb on - strand, within Shewana3_0033 at 40.814 kb on - strand, within Shewana3_0033 at 40.875 kb on + strand, within Shewana3_0033 at 40.889 kb on + strand, within Shewana3_0033 at 40.934 kb on + strand, within Shewana3_0033 at 40.958 kb on + strand, within Shewana3_0033 at 40.958 kb on + strand, within Shewana3_0033 at 40.966 kb on - strand, within Shewana3_0033 at 40.978 kb on + strand, within Shewana3_0033 at 41.020 kb on + strand, within Shewana3_0033 at 41.030 kb on + strand, within Shewana3_0033 at 41.094 kb on + strand, within Shewana3_0033 at 41.152 kb on + strand, within Shewana3_0033 at 41.210 kb on + strand, within Shewana3_0033 at 41.218 kb on - strand, within Shewana3_0033 at 41.252 kb on + strand at 41.302 kb on + strand at 41.330 kb on - strand at 41.404 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 5 mM remove 40,163 - -1.4 40,189 - -0.5 40,411 + Shewana3_0033 0.25 -1.4 40,414 - Shewana3_0033 0.26 -0.5 40,419 - Shewana3_0033 0.26 -0.6 40,419 - Shewana3_0033 0.26 -1.4 40,443 + Shewana3_0033 0.28 -2.8 40,451 - Shewana3_0033 0.29 -1.2 40,583 + Shewana3_0033 0.39 -1.5 40,677 + Shewana3_0033 0.46 -1.3 40,685 - Shewana3_0033 0.47 -1.6 40,772 - Shewana3_0033 0.53 -1.1 40,814 - Shewana3_0033 0.57 -1.1 40,875 + Shewana3_0033 0.61 -1.0 40,889 + Shewana3_0033 0.62 -1.3 40,934 + Shewana3_0033 0.66 -0.4 40,958 + Shewana3_0033 0.68 -0.7 40,958 + Shewana3_0033 0.68 -0.1 40,966 - Shewana3_0033 0.68 -1.9 40,978 + Shewana3_0033 0.69 -0.8 41,020 + Shewana3_0033 0.73 -0.7 41,030 + Shewana3_0033 0.73 -1.2 41,094 + Shewana3_0033 0.78 -1.1 41,152 + Shewana3_0033 0.83 -0.8 41,210 + Shewana3_0033 0.87 -1.4 41,218 - Shewana3_0033 0.88 -1.3 41,252 + -1.3 41,302 + -1.1 41,330 - -0.6 41,404 + -1.0
Or see this region's nucleotide sequence