Experiment: 5-Hydroxymethylfurfural 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4385 and Shewana3_4386 are separated by 8 nucleotides Shewana3_4386 and Shewana3_4387 are separated by 13 nucleotides
Shewana3_4385: Shewana3_4385 - secretion protein HlyD (RefSeq), at 272,391 to 273,635
_4385
Shewana3_4386: Shewana3_4386 - outer membrane efflux protein (RefSeq), at 273,644 to 274,927
_4386
Shewana3_4387: Shewana3_4387 - peptidase M56, BlaR1 (RefSeq), at 274,941 to 275,921
_4387
Position (kb) 273
274
275 Strain fitness (log2 ratio) -1
0
1
2 at 272.872 kb on + strand, within Shewana3_4385 at 273.031 kb on - strand, within Shewana3_4385 at 273.485 kb on + strand, within Shewana3_4385 at 273.493 kb on - strand, within Shewana3_4385 at 273.514 kb on + strand at 273.766 kb on + strand at 273.827 kb on + strand, within Shewana3_4386 at 273.858 kb on - strand, within Shewana3_4386 at 273.902 kb on - strand, within Shewana3_4386 at 274.047 kb on + strand, within Shewana3_4386 at 274.048 kb on + strand, within Shewana3_4386 at 274.195 kb on - strand, within Shewana3_4386 at 274.245 kb on + strand, within Shewana3_4386 at 274.253 kb on - strand, within Shewana3_4386 at 274.253 kb on - strand, within Shewana3_4386 at 274.335 kb on + strand, within Shewana3_4386 at 274.343 kb on - strand, within Shewana3_4386 at 274.363 kb on - strand, within Shewana3_4386 at 274.513 kb on - strand, within Shewana3_4386 at 274.660 kb on - strand, within Shewana3_4386 at 274.806 kb on - strand at 275.004 kb on - strand at 275.059 kb on + strand, within Shewana3_4387 at 275.232 kb on - strand, within Shewana3_4387 at 275.404 kb on + strand, within Shewana3_4387 at 275.438 kb on - strand, within Shewana3_4387 at 275.491 kb on + strand, within Shewana3_4387 at 275.497 kb on - strand, within Shewana3_4387 at 275.561 kb on - strand, within Shewana3_4387 at 275.733 kb on + strand, within Shewana3_4387 at 275.733 kb on + strand, within Shewana3_4387 at 275.741 kb on - strand, within Shewana3_4387 at 275.752 kb on + strand, within Shewana3_4387 at 275.833 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 5 mM remove 272,872 + Shewana3_4385 0.39 -0.7 273,031 - Shewana3_4385 0.51 -0.4 273,485 + Shewana3_4385 0.88 +0.0 273,493 - Shewana3_4385 0.89 -0.3 273,514 + -0.8 273,766 + -0.5 273,827 + Shewana3_4386 0.14 +0.8 273,858 - Shewana3_4386 0.17 -0.3 273,902 - Shewana3_4386 0.20 -0.1 274,047 + Shewana3_4386 0.31 -0.3 274,048 + Shewana3_4386 0.31 -0.7 274,195 - Shewana3_4386 0.43 +0.8 274,245 + Shewana3_4386 0.47 -0.4 274,253 - Shewana3_4386 0.47 +0.9 274,253 - Shewana3_4386 0.47 +0.1 274,335 + Shewana3_4386 0.54 +1.9 274,343 - Shewana3_4386 0.54 +0.6 274,363 - Shewana3_4386 0.56 -0.5 274,513 - Shewana3_4386 0.68 +1.1 274,660 - Shewana3_4386 0.79 +0.1 274,806 - -1.4 275,004 - +0.9 275,059 + Shewana3_4387 0.12 -0.4 275,232 - Shewana3_4387 0.30 -0.7 275,404 + Shewana3_4387 0.47 -0.8 275,438 - Shewana3_4387 0.51 +1.9 275,491 + Shewana3_4387 0.56 -0.8 275,497 - Shewana3_4387 0.57 +0.4 275,561 - Shewana3_4387 0.63 +0.5 275,733 + Shewana3_4387 0.81 +0.3 275,733 + Shewana3_4387 0.81 -1.6 275,741 - Shewana3_4387 0.82 -0.4 275,752 + Shewana3_4387 0.83 +0.3 275,833 - +0.3
Or see this region's nucleotide sequence