Experiment: 5-Hydroxymethylfurfural 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4324 and Shewana3_4325 overlap by 4 nucleotides Shewana3_4325 and Shewana3_4326 are separated by 2 nucleotides Shewana3_4326 and Shewana3_4327 are separated by 236 nucleotides Shewana3_4327 and Shewana3_4328 are separated by 137 nucleotides
Shewana3_4324: Shewana3_4324 - methionine sulfoxide reductase A (RefSeq), at 214,517 to 215,089
_4324
Shewana3_4325: Shewana3_4325 - methionine sulfoxide reductase A (RefSeq), at 215,086 to 215,586
_4325
Shewana3_4326: Shewana3_4326 - methionine sulfoxide reductase B (RefSeq), at 215,589 to 216,035
_4326
Shewana3_4327: Shewana3_4327 - hypothetical protein (RefSeq), at 216,272 to 216,787
_4327
Shewana3_4328: Shewana3_4328 - alkylhydroperoxidase (RefSeq), at 216,925 to 217,479
_4328
Position (kb) 215
216
217 Strain fitness (log2 ratio) -2
-1
0
1 at 214.644 kb on + strand, within Shewana3_4324 at 214.644 kb on + strand, within Shewana3_4324 at 214.644 kb on + strand, within Shewana3_4324 at 214.652 kb on - strand, within Shewana3_4324 at 214.652 kb on - strand, within Shewana3_4324 at 214.652 kb on - strand, within Shewana3_4324 at 214.769 kb on - strand, within Shewana3_4324 at 214.787 kb on + strand, within Shewana3_4324 at 214.830 kb on - strand, within Shewana3_4324 at 214.840 kb on - strand, within Shewana3_4324 at 214.916 kb on + strand, within Shewana3_4324 at 215.096 kb on - strand at 215.174 kb on - strand, within Shewana3_4325 at 215.318 kb on + strand, within Shewana3_4325 at 215.473 kb on - strand, within Shewana3_4325 at 215.568 kb on - strand at 215.603 kb on - strand at 215.620 kb on + strand at 215.680 kb on - strand, within Shewana3_4326 at 215.702 kb on + strand, within Shewana3_4326 at 215.814 kb on + strand, within Shewana3_4326 at 215.859 kb on - strand, within Shewana3_4326 at 215.880 kb on + strand, within Shewana3_4326 at 215.964 kb on - strand, within Shewana3_4326 at 215.974 kb on + strand, within Shewana3_4326 at 215.974 kb on + strand, within Shewana3_4326 at 215.994 kb on - strand at 216.058 kb on + strand at 216.148 kb on + strand at 216.156 kb on - strand at 216.156 kb on - strand at 216.218 kb on + strand at 216.576 kb on + strand, within Shewana3_4327 at 216.576 kb on + strand, within Shewana3_4327 at 216.702 kb on + strand, within Shewana3_4327 at 216.823 kb on + strand at 216.823 kb on + strand at 216.823 kb on + strand at 216.888 kb on - strand at 216.965 kb on + strand at 216.978 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 5 mM remove 214,644 + Shewana3_4324 0.22 -0.3 214,644 + Shewana3_4324 0.22 +0.7 214,644 + Shewana3_4324 0.22 -0.5 214,652 - Shewana3_4324 0.24 -0.8 214,652 - Shewana3_4324 0.24 -1.6 214,652 - Shewana3_4324 0.24 +0.1 214,769 - Shewana3_4324 0.44 -0.6 214,787 + Shewana3_4324 0.47 +0.4 214,830 - Shewana3_4324 0.55 -1.9 214,840 - Shewana3_4324 0.56 -1.8 214,916 + Shewana3_4324 0.70 -1.6 215,096 - +0.6 215,174 - Shewana3_4325 0.18 -0.1 215,318 + Shewana3_4325 0.46 -1.2 215,473 - Shewana3_4325 0.77 +0.2 215,568 - +0.1 215,603 - -0.5 215,620 + -2.1 215,680 - Shewana3_4326 0.20 -0.5 215,702 + Shewana3_4326 0.25 -0.7 215,814 + Shewana3_4326 0.50 -0.7 215,859 - Shewana3_4326 0.60 +0.2 215,880 + Shewana3_4326 0.65 -0.7 215,964 - Shewana3_4326 0.84 +0.1 215,974 + Shewana3_4326 0.86 -1.4 215,974 + Shewana3_4326 0.86 -1.5 215,994 - +0.5 216,058 + -0.6 216,148 + +1.3 216,156 - +0.3 216,156 - +0.2 216,218 + -2.0 216,576 + Shewana3_4327 0.59 -0.9 216,576 + Shewana3_4327 0.59 -0.2 216,702 + Shewana3_4327 0.83 -0.5 216,823 + -0.3 216,823 + +0.3 216,823 + +0.4 216,888 - +0.4 216,965 + +0.5 216,978 - +0.1
Or see this region's nucleotide sequence