Experiment: 5-Hydroxymethylfurfural 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4175 and Shewana3_4176 are separated by 414 nucleotides Shewana3_4176 and Shewana3_4177 overlap by 26 nucleotides
Shewana3_4175: Shewana3_4175 - hypothetical protein (RefSeq), at 41,152 to 42,258
_4175
Shewana3_4176: Shewana3_4176 - hypothetical protein (RefSeq), at 42,673 to 43,521
_4176
Shewana3_4177: Shewana3_4177 - CBS domain-containing protein (RefSeq), at 43,496 to 44,170
_4177
Position (kb) 42
43
44 Strain fitness (log2 ratio) -2
-1
0
1
2 at 41.863 kb on + strand, within Shewana3_4175 at 41.917 kb on + strand, within Shewana3_4175 at 42.066 kb on + strand, within Shewana3_4175 at 42.122 kb on + strand, within Shewana3_4175 at 42.125 kb on - strand, within Shewana3_4175 at 42.383 kb on + strand at 42.391 kb on - strand at 42.391 kb on - strand at 42.435 kb on + strand at 42.443 kb on - strand at 42.443 kb on - strand at 42.443 kb on - strand at 42.629 kb on + strand at 42.630 kb on + strand at 42.630 kb on + strand at 42.650 kb on - strand at 42.765 kb on - strand, within Shewana3_4176 at 43.253 kb on + strand, within Shewana3_4176 at 43.253 kb on + strand, within Shewana3_4176 at 43.284 kb on + strand, within Shewana3_4176 at 43.561 kb on - strand at 43.566 kb on - strand, within Shewana3_4177 at 43.821 kb on - strand, within Shewana3_4177 at 43.827 kb on - strand, within Shewana3_4177 at 43.849 kb on + strand, within Shewana3_4177 at 44.367 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 5 mM remove 41,863 + Shewana3_4175 0.64 +0.1 41,917 + Shewana3_4175 0.69 +0.5 42,066 + Shewana3_4175 0.83 -0.5 42,122 + Shewana3_4175 0.88 -0.7 42,125 - Shewana3_4175 0.88 +0.3 42,383 + -0.3 42,391 - +0.3 42,391 - +0.7 42,435 + -2.7 42,443 - +1.3 42,443 - +0.5 42,443 - -0.6 42,629 + -1.3 42,630 + +1.9 42,630 + +0.2 42,650 - +1.1 42,765 - Shewana3_4176 0.11 +1.1 43,253 + Shewana3_4176 0.68 -0.3 43,253 + Shewana3_4176 0.68 -0.7 43,284 + Shewana3_4176 0.72 -2.2 43,561 - -0.1 43,566 - Shewana3_4177 0.10 -0.0 43,821 - Shewana3_4177 0.48 +0.2 43,827 - Shewana3_4177 0.49 -1.0 43,849 + Shewana3_4177 0.52 -2.0 44,367 - +0.9
Or see this region's nucleotide sequence