Strain Fitness in Shewanella loihica PV-4 around Shew_3532
Experiment: LB
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | LB |
---|---|---|---|---|---|
remove | |||||
4,219,096 | + | Shew_3531 | 0.27 | -2.1 | |
4,219,129 | + | Shew_3531 | 0.30 | -3.1 | |
4,219,162 | + | Shew_3531 | 0.33 | -3.1 | |
4,219,550 | - | Shew_3531 | 0.63 | -2.5 | |
4,219,555 | - | Shew_3531 | 0.64 | -3.1 | |
4,219,666 | + | Shew_3531 | 0.73 | -2.3 | |
4,219,666 | + | Shew_3531 | 0.73 | -2.2 | |
4,219,674 | - | Shew_3531 | 0.73 | -2.3 | |
4,219,727 | + | Shew_3531 | 0.77 | -1.9 | |
4,219,727 | + | Shew_3531 | 0.77 | -3.5 | |
4,219,727 | + | Shew_3531 | 0.77 | -2.2 | |
4,219,940 | + | -2.5 | |||
4,220,185 | + | Shew_3532 | 0.26 | -2.4 | |
4,220,246 | - | Shew_3532 | 0.40 | -0.2 | |
4,220,534 | - | +0.2 | |||
4,221,066 | + | Shew_3533 | 0.53 | -0.5 | |
4,221,122 | - | Shew_3533 | 0.60 | -0.1 | |
4,221,143 | + | Shew_3533 | 0.63 | +0.4 | |
4,221,232 | + | Shew_3533 | 0.74 | +0.2 | |
4,221,393 | + | +0.2 | |||
4,221,427 | + | -0.3 |
Or see this region's nucleotide sequence