Strain Fitness in Shewanella loihica PV-4 around Shew_3383

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_3382 and Shew_3383 are separated by 79 nucleotidesShew_3383 and ubiA are separated by 225 nucleotides Shew_3382: Shew_3382 - delta-aminolevulinic acid dehydratase (RefSeq), at 4,030,716 to 4,031,732 _3382 Shew_3383: Shew_3383 - hypothetical protein (RefSeq), at 4,031,812 to 4,032,372 _3383 Shew_3384: ubiA - 4-hydroxybenzoate octaprenyltransferase (RefSeq), at 4,032,598 to 4,033,458 ubiA Position (kb) 4031 4032 4033Strain fitness (log2 ratio) -1 0 1at 4032.017 kb on + strand, within Shew_3383at 4032.050 kb on - strand, within Shew_3383at 4032.315 kb on - strand, within Shew_3383at 4032.384 kb on + strandat 4032.392 kb on - strandat 4032.556 kb on + strandat 4032.564 kb on - strandat 4032.564 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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4,032,017 + Shew_3383 0.37 -1.3
4,032,050 - Shew_3383 0.42 -0.9
4,032,315 - Shew_3383 0.90 -0.0
4,032,384 + +0.2
4,032,392 - -0.1
4,032,556 + +0.8
4,032,564 - +1.3
4,032,564 - +0.4

Or see this region's nucleotide sequence