Strain Fitness in Shewanella loihica PV-4 around Shew_2129

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2128 and Shew_2129 are separated by 218 nucleotidesShew_2129 and Shew_2130 are separated by 1 nucleotides Shew_2128: Shew_2128 - transglutaminase domain-containing protein (RefSeq), at 2,466,551 to 2,468,593 _2128 Shew_2129: Shew_2129 - exodeoxyribonuclease V, gamma subunit (RefSeq), at 2,468,812 to 2,472,390 _2129 Shew_2130: Shew_2130 - exodeoxyribonuclease V, beta subunit (RefSeq), at 2,472,392 to 2,476,063 _2130 Position (kb) 2468 2469 2470 2471 2472 2473Strain fitness (log2 ratio) -3 -2 -1 0 1at 2468.022 kb on + strand, within Shew_2128at 2468.040 kb on - strand, within Shew_2128at 2468.334 kb on - strand, within Shew_2128at 2468.500 kb on + strandat 2468.588 kb on + strandat 2468.665 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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2,468,022 + Shew_2128 0.72 +0.3
2,468,040 - Shew_2128 0.73 -0.4
2,468,334 - Shew_2128 0.87 +1.1
2,468,500 + -3.3
2,468,588 + -1.4
2,468,665 - +0.9

Or see this region's nucleotide sequence