Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_1260 and Shew_1261 are separated by 5 nucleotides Shew_1261 and Shew_1262 are separated by 140 nucleotides Shew_1262 and Shew_1263 are separated by 147 nucleotides
Shew_1260: Shew_1260 - DNA methylase N-4/N-6 domain-containing protein (RefSeq), at 1,455,597 to 1,457,756
_1260
Shew_1261: Shew_1261 - type III restriction enzyme, res subunit (RefSeq), at 1,457,762 to 1,460,347
_1261
Shew_1262: Shew_1262 - hypothetical protein (RefSeq), at 1,460,488 to 1,460,853
_1262
Shew_1263: Shew_1263 - hypothetical protein (RefSeq), at 1,461,001 to 1,461,984
_1263
Position (kb) 1457
1458
1459
1460
1461 Strain fitness (log2 ratio) -1
0
1 at 1456.837 kb on + strand, within Shew_1260 at 1457.340 kb on - strand, within Shew_1260 at 1457.692 kb on + strand at 1457.884 kb on + strand at 1458.270 kb on + strand, within Shew_1261 at 1458.851 kb on + strand, within Shew_1261 at 1459.171 kb on + strand, within Shew_1261 at 1459.629 kb on - strand, within Shew_1261 at 1460.445 kb on - strand at 1461.019 kb on + strand at 1461.066 kb on - strand at 1461.076 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,456,837 + Shew_1260 0.57 +0.1 1,457,340 - Shew_1260 0.81 -0.0 1,457,692 + +0.7 1,457,884 + +0.4 1,458,270 + Shew_1261 0.20 +0.0 1,458,851 + Shew_1261 0.42 -0.9 1,459,171 + Shew_1261 0.54 -0.1 1,459,629 - Shew_1261 0.72 -1.6 1,460,445 - +0.8 1,461,019 + +0.3 1,461,066 - +0.2 1,461,076 - +1.1
Or see this region's nucleotide sequence