Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0789 and Shew_0790 are separated by 16 nucleotides Shew_0790 and Shew_0791 are separated by 347 nucleotides
Shew_0789: Shew_0789 - Mg2+ transporter protein, CorA family protein (RefSeq), at 901,545 to 902,513
_0789
Shew_0790: Shew_0790 - hypothetical protein (RefSeq), at 902,530 to 903,081
_0790
Shew_0791: Shew_0791 - spermine synthase (RefSeq), at 903,429 to 904,172
_0791
Position (kb) 902
903
904 Strain fitness (log2 ratio) -1
0
1 at 901.783 kb on + strand, within Shew_0789 at 901.783 kb on + strand, within Shew_0789 at 901.851 kb on - strand, within Shew_0789 at 901.970 kb on - strand, within Shew_0789 at 902.260 kb on + strand, within Shew_0789 at 902.268 kb on - strand, within Shew_0789 at 902.268 kb on - strand, within Shew_0789 at 902.491 kb on + strand at 902.579 kb on + strand at 902.719 kb on + strand, within Shew_0790 at 902.868 kb on - strand, within Shew_0790 at 902.967 kb on + strand, within Shew_0790 at 902.975 kb on - strand, within Shew_0790 at 903.226 kb on - strand at 903.248 kb on + strand at 903.248 kb on + strand at 903.248 kb on + strand at 903.248 kb on + strand at 903.248 kb on + strand at 903.256 kb on - strand at 903.256 kb on - strand at 903.292 kb on + strand at 903.294 kb on + strand at 903.381 kb on - strand at 903.522 kb on - strand, within Shew_0791 at 903.526 kb on + strand, within Shew_0791 at 903.550 kb on + strand, within Shew_0791 at 903.568 kb on - strand, within Shew_0791 at 903.669 kb on - strand, within Shew_0791 at 903.917 kb on + strand, within Shew_0791 at 903.925 kb on - strand, within Shew_0791 at 903.925 kb on - strand, within Shew_0791 at 903.925 kb on - strand, within Shew_0791 at 903.925 kb on - strand, within Shew_0791 at 903.925 kb on - strand, within Shew_0791
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 901,783 + Shew_0789 0.25 -0.5 901,783 + Shew_0789 0.25 -0.7 901,851 - Shew_0789 0.32 +0.1 901,970 - Shew_0789 0.44 +1.0 902,260 + Shew_0789 0.74 +0.3 902,268 - Shew_0789 0.75 -0.0 902,268 - Shew_0789 0.75 -0.2 902,491 + +0.4 902,579 + +0.1 902,719 + Shew_0790 0.34 -0.4 902,868 - Shew_0790 0.61 -0.1 902,967 + Shew_0790 0.79 -0.7 902,975 - Shew_0790 0.81 -0.6 903,226 - +0.3 903,248 + -0.4 903,248 + +0.2 903,248 + +0.2 903,248 + +0.5 903,248 + +0.1 903,256 - +0.0 903,256 - +0.3 903,292 + +0.6 903,294 + -0.1 903,381 - -0.3 903,522 - Shew_0791 0.12 -0.2 903,526 + Shew_0791 0.13 +0.1 903,550 + Shew_0791 0.16 +0.3 903,568 - Shew_0791 0.19 +0.6 903,669 - Shew_0791 0.32 -0.1 903,917 + Shew_0791 0.66 -0.0 903,925 - Shew_0791 0.67 -0.5 903,925 - Shew_0791 0.67 +0.3 903,925 - Shew_0791 0.67 +0.5 903,925 - Shew_0791 0.67 +0.1 903,925 - Shew_0791 0.67 +0.3
Or see this region's nucleotide sequence