Strain Fitness in Shewanella loihica PV-4 around Shew_0778

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0777 and Shew_0778 are separated by 577 nucleotidesShew_0778 and Shew_0779 are separated by 409 nucleotides Shew_0777: Shew_0777 - two-component response regulator (RefSeq), at 888,003 to 888,722 _0777 Shew_0778: Shew_0778 - hypothetical protein (RefSeq), at 889,300 to 889,731 _0778 Shew_0779: Shew_0779 - aspartate kinase III (RefSeq), at 890,141 to 891,499 _0779 Position (kb) 889 890Strain fitness (log2 ratio) -1 0 1at 888.526 kb on - strand, within Shew_0777at 888.905 kb on + strandat 889.082 kb on - strandat 889.245 kb on - strandat 889.245 kb on - strandat 889.245 kb on - strandat 889.245 kb on - strandat 889.355 kb on - strand, within Shew_0778at 889.480 kb on + strand, within Shew_0778at 889.534 kb on + strand, within Shew_0778at 889.539 kb on + strand, within Shew_0778at 889.655 kb on + strand, within Shew_0778at 889.822 kb on + strandat 889.830 kb on - strandat 890.329 kb on + strand, within Shew_0779at 890.370 kb on + strand, within Shew_0779

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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888,526 - Shew_0777 0.73 -0.3
888,905 + +0.0
889,082 - +1.4
889,245 - -0.3
889,245 - -0.7
889,245 - -1.1
889,245 - -0.2
889,355 - Shew_0778 0.13 -0.5
889,480 + Shew_0778 0.42 -0.3
889,534 + Shew_0778 0.54 -1.6
889,539 + Shew_0778 0.55 +0.3
889,655 + Shew_0778 0.82 -1.0
889,822 + -0.0
889,830 - -0.0
890,329 + Shew_0779 0.14 -0.1
890,370 + Shew_0779 0.17 +0.6

Or see this region's nucleotide sequence