Strain Fitness in Shewanella loihica PV-4 around Shew_0690

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShew_0689 and Shew_0690 are separated by 171 nucleotidesShew_0690 and Shew_0691 are separated by 189 nucleotides Shew_0689: Shew_0689 - hypothetical protein (RefSeq), at 782,796 to 783,626 _0689 Shew_0690: Shew_0690 - endonuclease/exonuclease/phosphatase (RefSeq), at 783,798 to 784,871 _0690 Shew_0691: Shew_0691 - hypothetical protein (RefSeq), at 785,061 to 786,194 _0691 Position (kb) 783 784 785Strain fitness (log2 ratio) -1 0 1at 783.331 kb on + strand, within Shew_0689at 783.339 kb on - strand, within Shew_0689at 783.722 kb on + strandat 783.790 kb on - strandat 783.841 kb on + strandat 783.896 kb on + strandat 783.904 kb on - strandat 784.095 kb on + strand, within Shew_0690at 784.137 kb on - strand, within Shew_0690at 784.605 kb on - strand, within Shew_0690at 784.683 kb on - strand, within Shew_0690at 784.830 kb on + strandat 784.838 kb on - strandat 785.041 kb on - strandat 785.305 kb on - strand, within Shew_0691at 785.305 kb on - strand, within Shew_0691at 785.368 kb on + strand, within Shew_0691at 785.368 kb on + strand, within Shew_0691at 785.368 kb on + strand, within Shew_0691at 785.376 kb on - strand, within Shew_0691at 785.468 kb on - strand, within Shew_0691at 785.558 kb on - strand, within Shew_0691at 785.620 kb on + strand, within Shew_0691at 785.620 kb on + strand, within Shew_0691at 785.692 kb on - strand, within Shew_0691

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
783,331 + Shew_0689 0.64 -0.1
783,339 - Shew_0689 0.65 -0.4
783,722 + +0.1
783,790 - -0.2
783,841 + +0.1
783,896 + -0.0
783,904 - +0.3
784,095 + Shew_0690 0.28 -0.6
784,137 - Shew_0690 0.32 -0.8
784,605 - Shew_0690 0.75 -1.6
784,683 - Shew_0690 0.82 -0.1
784,830 + +0.7
784,838 - -0.0
785,041 - -0.5
785,305 - Shew_0691 0.22 +0.2
785,305 - Shew_0691 0.22 +0.5
785,368 + Shew_0691 0.27 +0.8
785,368 + Shew_0691 0.27 -0.5
785,368 + Shew_0691 0.27 -0.6
785,376 - Shew_0691 0.28 +0.5
785,468 - Shew_0691 0.36 +0.2
785,558 - Shew_0691 0.44 +0.1
785,620 + Shew_0691 0.49 -0.4
785,620 + Shew_0691 0.49 +0.3
785,692 - Shew_0691 0.56 +0.2

Or see this region's nucleotide sequence