Strain Fitness in Shewanella loihica PV-4 around Shew_0666

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0665 and Shew_0666 are separated by 77 nucleotidesShew_0666 and Shew_0667 overlap by 8 nucleotides Shew_0665: Shew_0665 - sulfite reductase (NADPH) flavoprotein, alpha chain (RefSeq), at 755,369 to 757,153 _0665 Shew_0666: Shew_0666 - sulfite reductase subunit beta (RefSeq), at 757,231 to 758,928 _0666 Shew_0667: Shew_0667 - phosphoadenosine phosphosulfate reductase (RefSeq), at 758,921 to 759,673 _0667 Position (kb) 757 758 759Strain fitness (log2 ratio) -3 -2 -1 0 1at 756.409 kb on - strand, within Shew_0665at 756.514 kb on + strand, within Shew_0665at 756.545 kb on - strand, within Shew_0665at 756.948 kb on + strand, within Shew_0665at 757.263 kb on + strandat 757.378 kb on - strandat 757.524 kb on - strand, within Shew_0666at 757.614 kb on + strand, within Shew_0666at 757.867 kb on + strand, within Shew_0666at 758.531 kb on + strand, within Shew_0666at 759.254 kb on + strand, within Shew_0667at 759.262 kb on - strand, within Shew_0667at 759.689 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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756,409 - Shew_0665 0.58 +0.2
756,514 + Shew_0665 0.64 +1.2
756,545 - Shew_0665 0.66 -0.0
756,948 + Shew_0665 0.88 -0.4
757,263 + -0.4
757,378 - -0.6
757,524 - Shew_0666 0.17 -3.0
757,614 + Shew_0666 0.23 -0.3
757,867 + Shew_0666 0.37 -0.2
758,531 + Shew_0666 0.77 +0.1
759,254 + Shew_0667 0.44 -0.8
759,262 - Shew_0667 0.45 -0.3
759,689 - -0.2

Or see this region's nucleotide sequence