Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_1736

Experiment: copper (II) chloride 0.75 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_1734 and Ga0059261_1735 are separated by 118 nucleotidesGa0059261_1735 and Ga0059261_1736 overlap by 4 nucleotidesGa0059261_1736 and Ga0059261_1737 are separated by 44 nucleotidesGa0059261_1737 and Ga0059261_1738 are separated by 9 nucleotides Ga0059261_1734: Ga0059261_1734 - ATP synthase alpha/beta family, nucleotide-binding domain, at 1,838,391 to 1,838,885 _1734 Ga0059261_1735: Ga0059261_1735 - DNA replication protein, at 1,839,004 to 1,839,834 _1735 Ga0059261_1736: Ga0059261_1736 - Transposase and inactivated derivatives, at 1,839,831 to 1,841,330 _1736 Ga0059261_1737: Ga0059261_1737 - hypothetical protein, at 1,841,375 to 1,841,782 _1737 Ga0059261_1738: Ga0059261_1738 - Ti-type conjugative transfer relaxase TraA, at 1,841,792 to 1,844,608 _1738 Position (kb) 1839 1840 1841 1842Strain fitness (log2 ratio) -1 0 1at 1838.867 kb on + strandat 1838.867 kb on + strandat 1838.868 kb on - strandat 1838.868 kb on - strandat 1838.869 kb on + strandat 1838.869 kb on + strandat 1838.869 kb on + strandat 1838.919 kb on - strandat 1841.647 kb on + strand, within Ga0059261_1737at 1841.647 kb on + strand, within Ga0059261_1737at 1841.648 kb on - strand, within Ga0059261_1737at 1841.648 kb on - strand, within Ga0059261_1737at 1841.648 kb on - strand, within Ga0059261_1737at 1841.648 kb on - strand, within Ga0059261_1737at 1841.649 kb on + strand, within Ga0059261_1737at 1841.649 kb on + strand, within Ga0059261_1737at 1841.650 kb on - strand, within Ga0059261_1737at 1841.650 kb on - strand, within Ga0059261_1737at 1841.650 kb on - strand, within Ga0059261_1737at 1841.650 kb on - strand, within Ga0059261_1737at 1841.708 kb on - strand, within Ga0059261_1737at 1841.793 kb on + strandat 1841.793 kb on + strandat 1841.830 kb on + strandat 1841.830 kb on + strandat 1841.830 kb on + strandat 1841.830 kb on + strandat 1841.831 kb on - strandat 1841.831 kb on - strandat 1841.831 kb on - strandat 1841.982 kb on + strandat 1841.982 kb on + strandat 1841.982 kb on + strandat 1841.982 kb on + strandat 1841.983 kb on - strandat 1841.983 kb on - strandat 1841.983 kb on - strandat 1841.983 kb on - strandat 1841.983 kb on - strandat 1841.983 kb on - strandat 1841.983 kb on - strandat 1841.983 kb on - strandat 1842.017 kb on + strandat 1842.017 kb on + strandat 1842.017 kb on + strandat 1842.018 kb on - strandat 1842.018 kb on - strandat 1842.018 kb on - strandat 1842.282 kb on + strand, within Ga0059261_1738at 1842.282 kb on + strand, within Ga0059261_1738at 1842.282 kb on + strand, within Ga0059261_1738at 1842.283 kb on - strand, within Ga0059261_1738at 1842.283 kb on - strand, within Ga0059261_1738at 1842.283 kb on - strand, within Ga0059261_1738at 1842.283 kb on - strand, within Ga0059261_1738at 1842.283 kb on - strand, within Ga0059261_1738at 1842.300 kb on + strand, within Ga0059261_1738at 1842.300 kb on + strand, within Ga0059261_1738at 1842.300 kb on + strand, within Ga0059261_1738at 1842.300 kb on + strand, within Ga0059261_1738at 1842.300 kb on + strand, within Ga0059261_1738at 1842.300 kb on + strand, within Ga0059261_1738

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 0.75 mM
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1,838,867 + +0.7
1,838,867 + -0.5
1,838,868 - +1.4
1,838,868 - +0.6
1,838,869 + +0.5
1,838,869 + -0.6
1,838,869 + +0.3
1,838,919 - +0.5
1,841,647 + Ga0059261_1737 0.67 +0.5
1,841,647 + Ga0059261_1737 0.67 +0.2
1,841,648 - Ga0059261_1737 0.67 -1.0
1,841,648 - Ga0059261_1737 0.67 +0.5
1,841,648 - Ga0059261_1737 0.67 +0.1
1,841,648 - Ga0059261_1737 0.67 +1.2
1,841,649 + Ga0059261_1737 0.67 -0.0
1,841,649 + Ga0059261_1737 0.67 -1.1
1,841,650 - Ga0059261_1737 0.67 -0.6
1,841,650 - Ga0059261_1737 0.67 -0.3
1,841,650 - Ga0059261_1737 0.67 +0.4
1,841,650 - Ga0059261_1737 0.67 +0.3
1,841,708 - Ga0059261_1737 0.82 +1.0
1,841,793 + +0.8
1,841,793 + +1.1
1,841,830 + -0.4
1,841,830 + -0.5
1,841,830 + -0.3
1,841,830 + +0.0
1,841,831 - -1.2
1,841,831 - +0.9
1,841,831 - +0.7
1,841,982 + +1.3
1,841,982 + -0.7
1,841,982 + +0.2
1,841,982 + -0.7
1,841,983 - -0.7
1,841,983 - +0.0
1,841,983 - -0.2
1,841,983 - +1.0
1,841,983 - +1.5
1,841,983 - +0.7
1,841,983 - -1.1
1,841,983 - +0.0
1,842,017 + -0.1
1,842,017 + +0.2
1,842,017 + -0.7
1,842,018 - +0.4
1,842,018 - -0.1
1,842,018 - +0.3
1,842,282 + Ga0059261_1738 0.17 -0.3
1,842,282 + Ga0059261_1738 0.17 -1.1
1,842,282 + Ga0059261_1738 0.17 -0.3
1,842,283 - Ga0059261_1738 0.17 +0.7
1,842,283 - Ga0059261_1738 0.17 -0.5
1,842,283 - Ga0059261_1738 0.17 +0.0
1,842,283 - Ga0059261_1738 0.17 +0.1
1,842,283 - Ga0059261_1738 0.17 +0.5
1,842,300 + Ga0059261_1738 0.18 -0.0
1,842,300 + Ga0059261_1738 0.18 -0.1
1,842,300 + Ga0059261_1738 0.18 +0.4
1,842,300 + Ga0059261_1738 0.18 +0.8
1,842,300 + Ga0059261_1738 0.18 -0.5
1,842,300 + Ga0059261_1738 0.18 -0.2

Or see this region's nucleotide sequence