Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0889

Experiment: copper (II) chloride 0.75 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGa0059261_0887 and Ga0059261_0888 overlap by 4 nucleotidesGa0059261_0888 and Ga0059261_0889 are separated by 350 nucleotidesGa0059261_0889 and Ga0059261_0890 are separated by 64 nucleotidesGa0059261_0890 and Ga0059261_0891 are separated by 19 nucleotidesGa0059261_0891 and Ga0059261_0892 are separated by 52 nucleotidesGa0059261_0892 and Ga0059261_0893 are separated by 27 nucleotides Ga0059261_0887: Ga0059261_0887 - Predicted transcriptional regulators, at 928,521 to 928,853 _0887 Ga0059261_0888: Ga0059261_0888 - Uncharacterized conserved protein, at 928,850 to 929,320 _0888 Ga0059261_0889: Ga0059261_0889 - Cold shock proteins, at 929,671 to 929,877 _0889 Ga0059261_0890: Ga0059261_0890 - hypothetical protein, at 929,942 to 930,160 _0890 Ga0059261_0891: Ga0059261_0891 - hypothetical protein, at 930,180 to 930,518 _0891 Ga0059261_0892: Ga0059261_0892 - hypothetical protein, at 930,571 to 930,699 _0892 Ga0059261_0893: Ga0059261_0893 - inosine-5'-monophosphate dehydrogenase, at 930,727 to 932,184 _0893 Position (kb) 929 930Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 928.859 kb on - strandat 928.910 kb on + strandat 928.910 kb on + strand, within Ga0059261_0888at 928.910 kb on + strand, within Ga0059261_0888at 928.911 kb on - strand, within Ga0059261_0888at 928.911 kb on - strand, within Ga0059261_0888at 928.911 kb on - strand, within Ga0059261_0888at 928.911 kb on - strand, within Ga0059261_0888at 929.006 kb on + strand, within Ga0059261_0888at 929.006 kb on + strand, within Ga0059261_0888at 929.006 kb on + strand, within Ga0059261_0888at 929.006 kb on + strand, within Ga0059261_0888at 929.007 kb on - strand, within Ga0059261_0888at 929.054 kb on + strand, within Ga0059261_0888at 929.054 kb on + strand, within Ga0059261_0888at 929.055 kb on - strand, within Ga0059261_0888at 929.090 kb on + strand, within Ga0059261_0888at 929.090 kb on + strand, within Ga0059261_0888at 929.090 kb on + strand, within Ga0059261_0888at 929.091 kb on - strand, within Ga0059261_0888at 929.091 kb on - strand, within Ga0059261_0888at 929.091 kb on - strand, within Ga0059261_0888at 929.091 kb on - strand, within Ga0059261_0888at 929.091 kb on - strand, within Ga0059261_0888at 929.091 kb on - strand, within Ga0059261_0888at 929.123 kb on + strand, within Ga0059261_0888at 929.123 kb on + strand, within Ga0059261_0888at 929.123 kb on + strand, within Ga0059261_0888at 929.123 kb on + strand, within Ga0059261_0888at 929.124 kb on - strand, within Ga0059261_0888at 929.124 kb on - strand, within Ga0059261_0888at 929.124 kb on - strand, within Ga0059261_0888at 929.124 kb on - strand, within Ga0059261_0888at 929.124 kb on - strand, within Ga0059261_0888at 929.124 kb on - strand, within Ga0059261_0888at 929.124 kb on - strand, within Ga0059261_0888at 929.124 kb on - strand, within Ga0059261_0888at 929.124 kb on - strand, within Ga0059261_0888at 929.124 kb on - strand, within Ga0059261_0888at 929.124 kb on - strand, within Ga0059261_0888at 929.124 kb on - strand, within Ga0059261_0888at 929.130 kb on - strand, within Ga0059261_0888at 929.234 kb on + strand, within Ga0059261_0888at 929.234 kb on + strand, within Ga0059261_0888at 929.234 kb on + strand, within Ga0059261_0888at 929.234 kb on + strand, within Ga0059261_0888at 929.235 kb on - strand, within Ga0059261_0888at 929.235 kb on - strand, within Ga0059261_0888at 929.235 kb on - strand, within Ga0059261_0888at 929.235 kb on - strand, within Ga0059261_0888at 929.235 kb on - strand, within Ga0059261_0888at 929.366 kb on - strandat 929.494 kb on - strandat 929.537 kb on - strandat 929.538 kb on + strandat 929.670 kb on + strandat 929.819 kb on - strand, within Ga0059261_0889at 929.819 kb on - strandat 929.819 kb on - strand, within Ga0059261_0889at 929.819 kb on - strand, within Ga0059261_0889at 929.959 kb on + strandat 929.959 kb on + strandat 929.959 kb on + strandat 929.960 kb on - strandat 929.960 kb on - strandat 930.076 kb on + strand, within Ga0059261_0890at 930.076 kb on + strand, within Ga0059261_0890at 930.076 kb on + strand, within Ga0059261_0890at 930.098 kb on + strand, within Ga0059261_0890at 930.098 kb on + strand, within Ga0059261_0890at 930.099 kb on - strand, within Ga0059261_0890at 930.106 kb on + strand, within Ga0059261_0890at 930.106 kb on + strand, within Ga0059261_0890at 930.106 kb on + strand, within Ga0059261_0890at 930.106 kb on + strand, within Ga0059261_0890at 930.106 kb on + strand, within Ga0059261_0890at 930.106 kb on + strand, within Ga0059261_0890at 930.107 kb on - strand, within Ga0059261_0890at 930.107 kb on - strand, within Ga0059261_0890at 930.107 kb on - strand, within Ga0059261_0890at 930.107 kb on - strand, within Ga0059261_0890at 930.158 kb on + strandat 930.159 kb on - strandat 930.159 kb on - strandat 930.189 kb on + strandat 930.190 kb on - strandat 930.318 kb on - strand, within Ga0059261_0891at 930.410 kb on - strand, within Ga0059261_0891at 930.425 kb on + strand, within Ga0059261_0891at 930.425 kb on + strand, within Ga0059261_0891at 930.426 kb on - strand, within Ga0059261_0891at 930.486 kb on + strandat 930.487 kb on - strandat 930.487 kb on - strandat 930.516 kb on + strandat 930.516 kb on + strandat 930.516 kb on + strandat 930.516 kb on + strandat 930.516 kb on + strandat 930.517 kb on - strandat 930.517 kb on - strandat 930.517 kb on - strandat 930.729 kb on - strandat 930.729 kb on - strandat 930.740 kb on + strandat 930.859 kb on - strandat 930.860 kb on + strandat 930.860 kb on + strandat 930.860 kb on + strandat 930.860 kb on + strandat 930.861 kb on - strandat 930.861 kb on - strandat 930.861 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 0.75 mM
remove
928,859 - -0.8
928,910 + -0.2
928,910 + Ga0059261_0888 0.13 -0.3
928,910 + Ga0059261_0888 0.13 +0.9
928,911 - Ga0059261_0888 0.13 -0.3
928,911 - Ga0059261_0888 0.13 +1.3
928,911 - Ga0059261_0888 0.13 -1.3
928,911 - Ga0059261_0888 0.13 -0.2
929,006 + Ga0059261_0888 0.33 -1.2
929,006 + Ga0059261_0888 0.33 -0.1
929,006 + Ga0059261_0888 0.33 -0.4
929,006 + Ga0059261_0888 0.33 +0.5
929,007 - Ga0059261_0888 0.33 +0.1
929,054 + Ga0059261_0888 0.43 -0.1
929,054 + Ga0059261_0888 0.43 +0.2
929,055 - Ga0059261_0888 0.44 +0.2
929,090 + Ga0059261_0888 0.51 +1.1
929,090 + Ga0059261_0888 0.51 +0.5
929,090 + Ga0059261_0888 0.51 -0.2
929,091 - Ga0059261_0888 0.51 -0.1
929,091 - Ga0059261_0888 0.51 +0.5
929,091 - Ga0059261_0888 0.51 -2.3
929,091 - Ga0059261_0888 0.51 +1.0
929,091 - Ga0059261_0888 0.51 -2.1
929,091 - Ga0059261_0888 0.51 +0.1
929,123 + Ga0059261_0888 0.58 +0.2
929,123 + Ga0059261_0888 0.58 +0.2
929,123 + Ga0059261_0888 0.58 +0.3
929,123 + Ga0059261_0888 0.58 -0.3
929,124 - Ga0059261_0888 0.58 +0.1
929,124 - Ga0059261_0888 0.58 -0.2
929,124 - Ga0059261_0888 0.58 +0.3
929,124 - Ga0059261_0888 0.58 -0.6
929,124 - Ga0059261_0888 0.58 -0.3
929,124 - Ga0059261_0888 0.58 -0.5
929,124 - Ga0059261_0888 0.58 -0.3
929,124 - Ga0059261_0888 0.58 -0.1
929,124 - Ga0059261_0888 0.58 -0.3
929,124 - Ga0059261_0888 0.58 +0.5
929,124 - Ga0059261_0888 0.58 -0.1
929,124 - Ga0059261_0888 0.58 +0.9
929,130 - Ga0059261_0888 0.59 -0.8
929,234 + Ga0059261_0888 0.82 -0.1
929,234 + Ga0059261_0888 0.82 -1.4
929,234 + Ga0059261_0888 0.82 -0.3
929,234 + Ga0059261_0888 0.82 -0.4
929,235 - Ga0059261_0888 0.82 -0.3
929,235 - Ga0059261_0888 0.82 -0.2
929,235 - Ga0059261_0888 0.82 -0.6
929,235 - Ga0059261_0888 0.82 -1.0
929,235 - Ga0059261_0888 0.82 -0.1
929,366 - +0.2
929,494 - +0.3
929,537 - -0.1
929,538 + +0.9
929,670 + +0.4
929,819 - Ga0059261_0889 0.71 -0.4
929,819 - -0.8
929,819 - Ga0059261_0889 0.71 -1.6
929,819 - Ga0059261_0889 0.71 -1.4
929,959 + -0.3
929,959 + -1.8
929,959 + -0.2
929,960 - +1.1
929,960 - -0.3
930,076 + Ga0059261_0890 0.61 -0.4
930,076 + Ga0059261_0890 0.61 -0.3
930,076 + Ga0059261_0890 0.61 -0.6
930,098 + Ga0059261_0890 0.71 +0.4
930,098 + Ga0059261_0890 0.71 +0.2
930,099 - Ga0059261_0890 0.72 -0.1
930,106 + Ga0059261_0890 0.75 +0.8
930,106 + Ga0059261_0890 0.75 -0.2
930,106 + Ga0059261_0890 0.75 -0.1
930,106 + Ga0059261_0890 0.75 -0.6
930,106 + Ga0059261_0890 0.75 -2.8
930,106 + Ga0059261_0890 0.75 +0.3
930,107 - Ga0059261_0890 0.75 -0.4
930,107 - Ga0059261_0890 0.75 -0.8
930,107 - Ga0059261_0890 0.75 +0.3
930,107 - Ga0059261_0890 0.75 -0.0
930,158 + -0.3
930,159 - -0.1
930,159 - -0.3
930,189 + -1.6
930,190 - -1.3
930,318 - Ga0059261_0891 0.41 +0.2
930,410 - Ga0059261_0891 0.68 -0.8
930,425 + Ga0059261_0891 0.72 +0.1
930,425 + Ga0059261_0891 0.72 +0.6
930,426 - Ga0059261_0891 0.73 +0.6
930,486 + -0.3
930,487 - -0.8
930,487 - +0.4
930,516 + +0.6
930,516 + +0.4
930,516 + -0.1
930,516 + -1.0
930,516 + +0.0
930,517 - +0.2
930,517 - -0.4
930,517 - +0.3
930,729 - -0.1
930,729 - +0.4
930,740 + -0.8
930,859 - +0.2
930,860 + +0.0
930,860 + -0.8
930,860 + -0.1
930,860 + +2.6
930,861 - -0.1
930,861 - +0.7
930,861 - +0.1

Or see this region's nucleotide sequence