Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0433

Experiment: copper (II) chloride 0.75 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0431 and Ga0059261_0432 are separated by 25 nucleotidesGa0059261_0432 and Ga0059261_0433 are separated by 17 nucleotidesGa0059261_0433 and Ga0059261_0434 are separated by 342 nucleotides Ga0059261_0431: Ga0059261_0431 - Domain of unknown function (DUF305), at 416,592 to 417,089 _0431 Ga0059261_0432: Ga0059261_0432 - Glutaredoxin and related proteins, at 417,115 to 417,876 _0432 Ga0059261_0433: Ga0059261_0433 - Uncharacterized protein conserved in bacteria, at 417,894 to 418,169 _0433 Ga0059261_0434: Ga0059261_0434 - Major Facilitator Superfamily, at 418,512 to 419,930 _0434 Position (kb) 417 418 419Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 416.914 kb on + strand, within Ga0059261_0431at 416.915 kb on - strand, within Ga0059261_0431at 416.915 kb on - strand, within Ga0059261_0431at 416.973 kb on + strand, within Ga0059261_0431at 416.973 kb on + strandat 416.973 kb on + strand, within Ga0059261_0431at 416.973 kb on + strand, within Ga0059261_0431at 416.973 kb on + strand, within Ga0059261_0431at 416.973 kb on + strand, within Ga0059261_0431at 416.974 kb on - strand, within Ga0059261_0431at 416.974 kb on - strand, within Ga0059261_0431at 416.974 kb on - strand, within Ga0059261_0431at 416.974 kb on - strand, within Ga0059261_0431at 416.974 kb on - strand, within Ga0059261_0431at 416.974 kb on - strand, within Ga0059261_0431at 416.977 kb on + strand, within Ga0059261_0431at 416.977 kb on + strand, within Ga0059261_0431at 416.978 kb on - strand, within Ga0059261_0431at 416.978 kb on - strand, within Ga0059261_0431at 416.978 kb on - strand, within Ga0059261_0431at 417.002 kb on + strand, within Ga0059261_0431at 417.002 kb on + strand, within Ga0059261_0431at 417.002 kb on + strandat 417.002 kb on + strand, within Ga0059261_0431at 417.003 kb on - strand, within Ga0059261_0431at 417.003 kb on - strand, within Ga0059261_0431at 417.113 kb on + strandat 417.113 kb on + strandat 417.113 kb on + strandat 417.114 kb on - strandat 417.190 kb on + strandat 417.257 kb on + strand, within Ga0059261_0432at 417.257 kb on + strand, within Ga0059261_0432at 417.257 kb on + strand, within Ga0059261_0432at 417.257 kb on + strand, within Ga0059261_0432at 417.258 kb on - strand, within Ga0059261_0432at 417.258 kb on - strand, within Ga0059261_0432at 417.258 kb on - strand, within Ga0059261_0432at 417.258 kb on - strand, within Ga0059261_0432at 417.258 kb on - strand, within Ga0059261_0432at 417.258 kb on - strand, within Ga0059261_0432at 417.258 kb on - strand, within Ga0059261_0432at 417.377 kb on + strand, within Ga0059261_0432at 417.377 kb on + strand, within Ga0059261_0432at 417.377 kb on + strand, within Ga0059261_0432at 417.377 kb on + strand, within Ga0059261_0432at 417.377 kb on + strand, within Ga0059261_0432at 417.378 kb on - strand, within Ga0059261_0432at 417.378 kb on - strand, within Ga0059261_0432at 417.378 kb on - strand, within Ga0059261_0432at 417.378 kb on - strand, within Ga0059261_0432at 417.379 kb on + strand, within Ga0059261_0432at 417.381 kb on + strand, within Ga0059261_0432at 417.381 kb on + strand, within Ga0059261_0432at 417.381 kb on + strand, within Ga0059261_0432at 417.381 kb on + strand, within Ga0059261_0432at 417.381 kb on + strand, within Ga0059261_0432at 417.381 kb on + strand, within Ga0059261_0432at 417.381 kb on + strand, within Ga0059261_0432at 417.381 kb on + strand, within Ga0059261_0432at 417.381 kb on + strand, within Ga0059261_0432at 417.381 kb on + strandat 417.381 kb on + strand, within Ga0059261_0432at 417.381 kb on + strand, within Ga0059261_0432at 417.382 kb on - strand, within Ga0059261_0432at 417.382 kb on - strand, within Ga0059261_0432at 417.382 kb on - strand, within Ga0059261_0432at 417.382 kb on - strand, within Ga0059261_0432at 417.382 kb on - strand, within Ga0059261_0432at 417.382 kb on - strand, within Ga0059261_0432at 417.382 kb on - strand, within Ga0059261_0432at 417.382 kb on - strand, within Ga0059261_0432at 417.382 kb on - strand, within Ga0059261_0432at 417.382 kb on - strand, within Ga0059261_0432at 417.382 kb on - strand, within Ga0059261_0432at 417.383 kb on + strand, within Ga0059261_0432at 417.383 kb on + strand, within Ga0059261_0432at 417.383 kb on + strand, within Ga0059261_0432at 417.383 kb on + strand, within Ga0059261_0432at 417.383 kb on + strand, within Ga0059261_0432at 417.383 kb on + strand, within Ga0059261_0432at 417.383 kb on + strand, within Ga0059261_0432at 417.383 kb on + strand, within Ga0059261_0432at 417.383 kb on + strand, within Ga0059261_0432at 417.383 kb on + strand, within Ga0059261_0432at 417.384 kb on - strand, within Ga0059261_0432at 417.384 kb on - strand, within Ga0059261_0432at 417.384 kb on - strand, within Ga0059261_0432at 417.384 kb on - strand, within Ga0059261_0432at 417.384 kb on - strand, within Ga0059261_0432at 417.384 kb on - strand, within Ga0059261_0432at 417.384 kb on - strand, within Ga0059261_0432at 417.384 kb on - strand, within Ga0059261_0432at 417.389 kb on + strand, within Ga0059261_0432at 417.419 kb on + strand, within Ga0059261_0432at 417.419 kb on + strand, within Ga0059261_0432at 417.419 kb on + strand, within Ga0059261_0432at 417.419 kb on + strand, within Ga0059261_0432at 417.419 kb on + strand, within Ga0059261_0432at 417.457 kb on + strand, within Ga0059261_0432at 417.457 kb on + strand, within Ga0059261_0432at 417.457 kb on + strand, within Ga0059261_0432at 417.458 kb on - strand, within Ga0059261_0432at 417.458 kb on - strand, within Ga0059261_0432at 417.458 kb on - strand, within Ga0059261_0432at 417.458 kb on - strand, within Ga0059261_0432at 417.472 kb on + strand, within Ga0059261_0432at 417.473 kb on - strand, within Ga0059261_0432at 417.599 kb on + strand, within Ga0059261_0432at 417.599 kb on + strand, within Ga0059261_0432at 417.599 kb on + strand, within Ga0059261_0432at 417.599 kb on + strand, within Ga0059261_0432at 417.599 kb on + strand, within Ga0059261_0432at 417.599 kb on + strand, within Ga0059261_0432at 417.599 kb on + strand, within Ga0059261_0432at 417.599 kb on + strand, within Ga0059261_0432at 417.599 kb on + strand, within Ga0059261_0432at 417.599 kb on + strand, within Ga0059261_0432at 417.600 kb on - strand, within Ga0059261_0432at 417.600 kb on - strand, within Ga0059261_0432at 417.600 kb on - strand, within Ga0059261_0432at 417.600 kb on - strand, within Ga0059261_0432at 417.600 kb on - strand, within Ga0059261_0432at 417.603 kb on + strand, within Ga0059261_0432at 417.603 kb on + strand, within Ga0059261_0432at 417.604 kb on - strandat 417.810 kb on - strandat 417.895 kb on + strandat 417.895 kb on + strandat 417.895 kb on + strandat 417.895 kb on + strandat 418.064 kb on + strand, within Ga0059261_0433at 418.065 kb on - strand, within Ga0059261_0433at 418.075 kb on + strand, within Ga0059261_0433at 418.075 kb on + strand, within Ga0059261_0433at 418.076 kb on - strand, within Ga0059261_0433at 418.076 kb on - strand, within Ga0059261_0433at 418.169 kb on + strandat 418.169 kb on + strandat 418.169 kb on + strandat 418.169 kb on + strandat 418.169 kb on + strandat 418.169 kb on + strandat 418.170 kb on - strandat 418.170 kb on - strandat 418.170 kb on - strandat 418.171 kb on + strandat 418.171 kb on + strandat 418.171 kb on + strandat 418.171 kb on + strandat 418.171 kb on + strandat 418.171 kb on + strandat 418.171 kb on + strandat 418.171 kb on + strandat 418.172 kb on - strandat 418.172 kb on - strandat 418.172 kb on - strandat 418.172 kb on - strandat 418.172 kb on - strandat 418.172 kb on - strandat 418.172 kb on - strandat 418.172 kb on - strandat 418.175 kb on + strandat 418.175 kb on + strandat 418.175 kb on + strandat 418.249 kb on + strandat 418.249 kb on + strandat 418.249 kb on + strandat 418.249 kb on + strandat 418.250 kb on - strandat 418.250 kb on - strandat 418.250 kb on - strandat 418.250 kb on - strandat 418.250 kb on - strandat 418.250 kb on - strandat 418.250 kb on - strandat 418.250 kb on - strandat 418.250 kb on - strandat 418.252 kb on + strandat 418.252 kb on + strandat 418.253 kb on - strandat 418.253 kb on - strandat 418.253 kb on - strandat 418.253 kb on - strandat 418.253 kb on - strandat 418.378 kb on + strandat 418.378 kb on + strandat 418.491 kb on + strandat 418.491 kb on + strandat 418.492 kb on - strandat 418.492 kb on - strandat 418.492 kb on - strandat 418.492 kb on - strandat 418.513 kb on + strandat 418.513 kb on + strandat 418.701 kb on + strand, within Ga0059261_0434at 418.720 kb on + strand, within Ga0059261_0434at 418.720 kb on + strand, within Ga0059261_0434at 418.720 kb on + strand, within Ga0059261_0434at 418.721 kb on - strandat 418.721 kb on - strand, within Ga0059261_0434at 418.727 kb on + strand, within Ga0059261_0434at 418.728 kb on - strand, within Ga0059261_0434at 418.728 kb on - strand, within Ga0059261_0434at 418.728 kb on - strand, within Ga0059261_0434at 418.799 kb on + strand, within Ga0059261_0434at 418.799 kb on + strand, within Ga0059261_0434at 418.800 kb on - strand, within Ga0059261_0434at 418.800 kb on - strand, within Ga0059261_0434at 418.801 kb on + strand, within Ga0059261_0434at 418.801 kb on + strand, within Ga0059261_0434at 418.801 kb on + strand, within Ga0059261_0434at 418.802 kb on - strandat 418.802 kb on - strand, within Ga0059261_0434at 418.802 kb on - strand, within Ga0059261_0434at 419.003 kb on + strand, within Ga0059261_0434at 419.003 kb on + strand, within Ga0059261_0434at 419.003 kb on + strand, within Ga0059261_0434at 419.003 kb on + strand, within Ga0059261_0434at 419.004 kb on - strand, within Ga0059261_0434at 419.004 kb on - strand, within Ga0059261_0434at 419.004 kb on - strand, within Ga0059261_0434at 419.004 kb on - strand, within Ga0059261_0434at 419.059 kb on + strand, within Ga0059261_0434at 419.059 kb on + strand, within Ga0059261_0434at 419.059 kb on + strand, within Ga0059261_0434at 419.059 kb on + strand, within Ga0059261_0434at 419.060 kb on - strand, within Ga0059261_0434at 419.060 kb on - strand, within Ga0059261_0434at 419.060 kb on - strand, within Ga0059261_0434at 419.060 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 0.75 mM
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416,914 + Ga0059261_0431 0.65 -0.1
416,915 - Ga0059261_0431 0.65 -0.4
416,915 - Ga0059261_0431 0.65 -0.4
416,973 + Ga0059261_0431 0.77 +1.7
416,973 + +0.0
416,973 + Ga0059261_0431 0.77 -0.4
416,973 + Ga0059261_0431 0.77 -0.0
416,973 + Ga0059261_0431 0.77 -0.3
416,973 + Ga0059261_0431 0.77 -0.2
416,974 - Ga0059261_0431 0.77 +0.1
416,974 - Ga0059261_0431 0.77 -2.5
416,974 - Ga0059261_0431 0.77 -0.8
416,974 - Ga0059261_0431 0.77 -0.1
416,974 - Ga0059261_0431 0.77 -0.3
416,974 - Ga0059261_0431 0.77 +0.6
416,977 + Ga0059261_0431 0.77 -0.1
416,977 + Ga0059261_0431 0.77 +0.2
416,978 - Ga0059261_0431 0.78 +0.2
416,978 - Ga0059261_0431 0.78 +0.8
416,978 - Ga0059261_0431 0.78 -0.0
417,002 + Ga0059261_0431 0.82 +0.1
417,002 + Ga0059261_0431 0.82 +1.3
417,002 + +0.8
417,002 + Ga0059261_0431 0.82 -1.6
417,003 - Ga0059261_0431 0.83 +1.0
417,003 - Ga0059261_0431 0.83 -0.5
417,113 + -0.1
417,113 + -0.6
417,113 + -0.3
417,114 - -0.2
417,190 + -0.8
417,257 + Ga0059261_0432 0.19 +0.1
417,257 + Ga0059261_0432 0.19 +0.2
417,257 + Ga0059261_0432 0.19 -0.5
417,257 + Ga0059261_0432 0.19 -0.2
417,258 - Ga0059261_0432 0.19 -2.1
417,258 - Ga0059261_0432 0.19 +0.1
417,258 - Ga0059261_0432 0.19 +0.9
417,258 - Ga0059261_0432 0.19 -0.2
417,258 - Ga0059261_0432 0.19 +0.8
417,258 - Ga0059261_0432 0.19 -1.3
417,258 - Ga0059261_0432 0.19 -1.4
417,377 + Ga0059261_0432 0.34 -0.3
417,377 + Ga0059261_0432 0.34 +0.1
417,377 + Ga0059261_0432 0.34 -0.6
417,377 + Ga0059261_0432 0.34 +0.4
417,377 + Ga0059261_0432 0.34 -0.3
417,378 - Ga0059261_0432 0.35 +0.2
417,378 - Ga0059261_0432 0.35 -1.6
417,378 - Ga0059261_0432 0.35 +0.3
417,378 - Ga0059261_0432 0.35 +0.2
417,379 + Ga0059261_0432 0.35 -0.3
417,381 + Ga0059261_0432 0.35 -0.1
417,381 + Ga0059261_0432 0.35 +0.1
417,381 + Ga0059261_0432 0.35 -0.8
417,381 + Ga0059261_0432 0.35 -1.2
417,381 + Ga0059261_0432 0.35 -0.7
417,381 + Ga0059261_0432 0.35 +0.8
417,381 + Ga0059261_0432 0.35 -1.2
417,381 + Ga0059261_0432 0.35 +1.1
417,381 + Ga0059261_0432 0.35 -0.4
417,381 + -0.2
417,381 + Ga0059261_0432 0.35 +0.1
417,381 + Ga0059261_0432 0.35 +0.2
417,382 - Ga0059261_0432 0.35 -1.8
417,382 - Ga0059261_0432 0.35 -0.4
417,382 - Ga0059261_0432 0.35 -0.2
417,382 - Ga0059261_0432 0.35 -0.2
417,382 - Ga0059261_0432 0.35 -1.5
417,382 - Ga0059261_0432 0.35 -0.8
417,382 - Ga0059261_0432 0.35 -1.1
417,382 - Ga0059261_0432 0.35 +0.2
417,382 - Ga0059261_0432 0.35 +0.1
417,382 - Ga0059261_0432 0.35 +0.1
417,382 - Ga0059261_0432 0.35 -0.5
417,383 + Ga0059261_0432 0.35 -1.1
417,383 + Ga0059261_0432 0.35 +2.7
417,383 + Ga0059261_0432 0.35 -0.0
417,383 + Ga0059261_0432 0.35 -0.9
417,383 + Ga0059261_0432 0.35 +2.1
417,383 + Ga0059261_0432 0.35 +0.2
417,383 + Ga0059261_0432 0.35 +1.0
417,383 + Ga0059261_0432 0.35 -0.0
417,383 + Ga0059261_0432 0.35 +0.2
417,383 + Ga0059261_0432 0.35 -0.6
417,384 - Ga0059261_0432 0.35 -0.8
417,384 - Ga0059261_0432 0.35 -0.3
417,384 - Ga0059261_0432 0.35 -0.5
417,384 - Ga0059261_0432 0.35 +0.2
417,384 - Ga0059261_0432 0.35 +0.2
417,384 - Ga0059261_0432 0.35 +0.0
417,384 - Ga0059261_0432 0.35 -1.9
417,384 - Ga0059261_0432 0.35 -0.4
417,389 + Ga0059261_0432 0.36 +0.4
417,419 + Ga0059261_0432 0.40 -0.1
417,419 + Ga0059261_0432 0.40 -3.3
417,419 + Ga0059261_0432 0.40 -1.1
417,419 + Ga0059261_0432 0.40 +0.2
417,419 + Ga0059261_0432 0.40 +0.1
417,457 + Ga0059261_0432 0.45 -1.1
417,457 + Ga0059261_0432 0.45 -1.7
417,457 + Ga0059261_0432 0.45 -1.0
417,458 - Ga0059261_0432 0.45 -0.3
417,458 - Ga0059261_0432 0.45 +0.8
417,458 - Ga0059261_0432 0.45 -2.3
417,458 - Ga0059261_0432 0.45 -0.1
417,472 + Ga0059261_0432 0.47 -0.4
417,473 - Ga0059261_0432 0.47 -1.3
417,599 + Ga0059261_0432 0.64 -0.8
417,599 + Ga0059261_0432 0.64 +1.0
417,599 + Ga0059261_0432 0.64 -0.2
417,599 + Ga0059261_0432 0.64 -0.5
417,599 + Ga0059261_0432 0.64 +0.1
417,599 + Ga0059261_0432 0.64 +0.5
417,599 + Ga0059261_0432 0.64 +0.5
417,599 + Ga0059261_0432 0.64 +0.1
417,599 + Ga0059261_0432 0.64 -0.5
417,599 + Ga0059261_0432 0.64 -0.4
417,600 - Ga0059261_0432 0.64 -0.4
417,600 - Ga0059261_0432 0.64 +0.0
417,600 - Ga0059261_0432 0.64 -0.2
417,600 - Ga0059261_0432 0.64 +0.4
417,600 - Ga0059261_0432 0.64 +0.4
417,603 + Ga0059261_0432 0.64 +0.8
417,603 + Ga0059261_0432 0.64 -0.2
417,604 - -0.2
417,810 - +0.5
417,895 + +0.6
417,895 + +0.0
417,895 + +0.4
417,895 + +0.1
418,064 + Ga0059261_0433 0.62 -0.2
418,065 - Ga0059261_0433 0.62 -0.3
418,075 + Ga0059261_0433 0.66 -0.8
418,075 + Ga0059261_0433 0.66 -0.4
418,076 - Ga0059261_0433 0.66 -0.5
418,076 - Ga0059261_0433 0.66 +0.6
418,169 + -0.7
418,169 + -0.2
418,169 + +0.0
418,169 + -0.3
418,169 + -0.4
418,169 + +0.4
418,170 - -0.1
418,170 - -0.1
418,170 - -1.2
418,171 + +0.1
418,171 + -1.4
418,171 + +0.1
418,171 + +0.0
418,171 + -0.5
418,171 + +0.6
418,171 + -1.2
418,171 + +0.6
418,172 - +1.0
418,172 - +0.0
418,172 - -0.3
418,172 - -0.5
418,172 - -0.3
418,172 - -0.1
418,172 - -0.3
418,172 - -0.4
418,175 + -0.3
418,175 + -0.9
418,175 + +0.5
418,249 + -2.4
418,249 + +0.0
418,249 + -0.1
418,249 + -0.0
418,250 - -0.0
418,250 - -0.4
418,250 - +1.2
418,250 - -0.5
418,250 - +0.3
418,250 - +0.9
418,250 - -0.6
418,250 - +0.6
418,250 - +0.2
418,252 + -0.0
418,252 + -0.2
418,253 - +0.2
418,253 - +0.1
418,253 - +0.4
418,253 - -0.6
418,253 - -1.0
418,378 + -0.3
418,378 + +0.6
418,491 + -0.1
418,491 + -0.4
418,492 - -0.4
418,492 - -0.4
418,492 - +0.1
418,492 - +0.2
418,513 + -1.1
418,513 + -1.8
418,701 + Ga0059261_0434 0.13 -0.6
418,720 + Ga0059261_0434 0.15 -0.1
418,720 + Ga0059261_0434 0.15 -0.2
418,720 + Ga0059261_0434 0.15 -0.1
418,721 - +1.8
418,721 - Ga0059261_0434 0.15 +1.3
418,727 + Ga0059261_0434 0.15 -0.8
418,728 - Ga0059261_0434 0.15 -0.1
418,728 - Ga0059261_0434 0.15 +0.3
418,728 - Ga0059261_0434 0.15 -0.5
418,799 + Ga0059261_0434 0.20 -1.7
418,799 + Ga0059261_0434 0.20 -0.1
418,800 - Ga0059261_0434 0.20 -0.2
418,800 - Ga0059261_0434 0.20 -0.7
418,801 + Ga0059261_0434 0.20 +0.2
418,801 + Ga0059261_0434 0.20 -0.6
418,801 + Ga0059261_0434 0.20 +0.8
418,802 - +1.5
418,802 - Ga0059261_0434 0.20 -0.1
418,802 - Ga0059261_0434 0.20 -0.1
419,003 + Ga0059261_0434 0.35 +0.1
419,003 + Ga0059261_0434 0.35 -0.1
419,003 + Ga0059261_0434 0.35 +0.2
419,003 + Ga0059261_0434 0.35 +0.1
419,004 - Ga0059261_0434 0.35 +0.5
419,004 - Ga0059261_0434 0.35 -1.2
419,004 - Ga0059261_0434 0.35 +1.4
419,004 - Ga0059261_0434 0.35 +0.3
419,059 + Ga0059261_0434 0.39 -0.5
419,059 + Ga0059261_0434 0.39 +1.3
419,059 + Ga0059261_0434 0.39 +0.9
419,059 + Ga0059261_0434 0.39 +0.3
419,060 - Ga0059261_0434 0.39 +0.0
419,060 - Ga0059261_0434 0.39 +0.4
419,060 - Ga0059261_0434 0.39 -0.2
419,060 - +2.8

Or see this region's nucleotide sequence