Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0125

Experiment: copper (II) chloride 0.75 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0124 and Ga0059261_0125 are separated by 38 nucleotidesGa0059261_0125 and Ga0059261_0126 overlap by 4 nucleotidesGa0059261_0126 and Ga0059261_0127 are separated by 8 nucleotides Ga0059261_0124: Ga0059261_0124 - DNA polymerase III, delta subunit, at 117,873 to 118,856 _0124 Ga0059261_0125: Ga0059261_0125 - methionyl-tRNA synthetase (EC 6.1.1.10), at 118,895 to 120,451 _0125 Ga0059261_0126: Ga0059261_0126 - hydrolase, TatD family, at 120,448 to 121,227 _0126 Ga0059261_0127: Ga0059261_0127 - Metal-dependent hydrolases of the beta-lactamase superfamily I, at 121,236 to 122,000 _0127 Position (kb) 118 119 120 121Strain fitness (log2 ratio) -1 0 1 2at 118.854 kb on + strandat 120.481 kb on + strandat 120.481 kb on + strandat 120.481 kb on + strandat 120.481 kb on + strandat 120.482 kb on - strandat 120.482 kb on - strandat 120.482 kb on - strandat 120.482 kb on - strandat 120.482 kb on - strandat 120.482 kb on - strandat 120.482 kb on - strandat 120.482 kb on - strandat 120.482 kb on - strandat 120.482 kb on - strandat 120.482 kb on - strandat 120.482 kb on - strandat 120.740 kb on - strand, within Ga0059261_0126at 120.742 kb on + strand, within Ga0059261_0126at 120.742 kb on + strandat 120.742 kb on + strand, within Ga0059261_0126at 120.743 kb on - strand, within Ga0059261_0126at 120.743 kb on - strand, within Ga0059261_0126at 120.743 kb on - strand, within Ga0059261_0126at 120.743 kb on - strand, within Ga0059261_0126at 120.743 kb on - strand, within Ga0059261_0126at 120.745 kb on + strand, within Ga0059261_0126at 120.745 kb on + strand, within Ga0059261_0126at 120.745 kb on + strand, within Ga0059261_0126at 120.746 kb on - strand, within Ga0059261_0126at 120.746 kb on - strand, within Ga0059261_0126at 120.746 kb on - strand, within Ga0059261_0126at 120.746 kb on - strand, within Ga0059261_0126at 120.753 kb on + strand, within Ga0059261_0126at 120.855 kb on + strand, within Ga0059261_0126at 120.855 kb on + strand, within Ga0059261_0126at 120.855 kb on + strand, within Ga0059261_0126at 120.856 kb on - strand, within Ga0059261_0126at 120.856 kb on - strand, within Ga0059261_0126at 120.896 kb on - strand, within Ga0059261_0126at 120.919 kb on - strand, within Ga0059261_0126at 120.964 kb on + strand, within Ga0059261_0126at 120.964 kb on + strand, within Ga0059261_0126at 120.964 kb on + strand, within Ga0059261_0126at 120.965 kb on - strand, within Ga0059261_0126at 120.965 kb on - strand, within Ga0059261_0126at 120.965 kb on - strand, within Ga0059261_0126at 120.965 kb on - strand, within Ga0059261_0126at 121.225 kb on + strandat 121.225 kb on + strandat 121.225 kb on + strandat 121.225 kb on + strandat 121.225 kb on + strandat 121.225 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 0.75 mM
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118,854 + +0.7
120,481 + -0.8
120,481 + +0.4
120,481 + -0.4
120,481 + +0.1
120,482 - -0.7
120,482 - -0.2
120,482 - +0.3
120,482 - +1.2
120,482 - +0.3
120,482 - -0.0
120,482 - -0.6
120,482 - -0.1
120,482 - +1.8
120,482 - +0.2
120,482 - +1.2
120,482 - +1.4
120,740 - Ga0059261_0126 0.37 -0.8
120,742 + Ga0059261_0126 0.38 +0.2
120,742 + +0.8
120,742 + Ga0059261_0126 0.38 -0.1
120,743 - Ga0059261_0126 0.38 -0.1
120,743 - Ga0059261_0126 0.38 -0.4
120,743 - Ga0059261_0126 0.38 +0.9
120,743 - Ga0059261_0126 0.38 -0.2
120,743 - Ga0059261_0126 0.38 +0.4
120,745 + Ga0059261_0126 0.38 +0.2
120,745 + Ga0059261_0126 0.38 +0.3
120,745 + Ga0059261_0126 0.38 +0.3
120,746 - Ga0059261_0126 0.38 +0.3
120,746 - Ga0059261_0126 0.38 +0.2
120,746 - Ga0059261_0126 0.38 -0.8
120,746 - Ga0059261_0126 0.38 +0.9
120,753 + Ga0059261_0126 0.39 +0.4
120,855 + Ga0059261_0126 0.52 +0.2
120,855 + Ga0059261_0126 0.52 +0.2
120,855 + Ga0059261_0126 0.52 -0.1
120,856 - Ga0059261_0126 0.52 +1.3
120,856 - Ga0059261_0126 0.52 -0.5
120,896 - Ga0059261_0126 0.57 +1.6
120,919 - Ga0059261_0126 0.60 +0.2
120,964 + Ga0059261_0126 0.66 -0.2
120,964 + Ga0059261_0126 0.66 -0.5
120,964 + Ga0059261_0126 0.66 -0.5
120,965 - Ga0059261_0126 0.66 +0.1
120,965 - Ga0059261_0126 0.66 +0.1
120,965 - Ga0059261_0126 0.66 +0.8
120,965 - Ga0059261_0126 0.66 -1.0
121,225 + +0.2
121,225 + +0.0
121,225 + +1.8
121,225 + +0.6
121,225 + -0.1
121,225 + -0.2

Or see this region's nucleotide sequence