Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01787

Experiment: PYE with Thallium(I) acetate 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01786 and CCNA_01787 are separated by 184 nucleotidesCCNA_01787 and CCNA_01788 are separated by 254 nucleotidesCCNA_01788 and CCNA_01789 are separated by 178 nucleotides CCNA_01786: CCNA_01786 - EcsC family protein, at 1,913,996 to 1,914,736 _01786 CCNA_01787: CCNA_01787 - transposase, at 1,914,921 to 1,915,856 _01787 CCNA_01788: CCNA_01788 - hypothetical protein, at 1,916,111 to 1,916,470 _01788 CCNA_01789: CCNA_01789 - acetyltransferase, GNAT family, at 1,916,649 to 1,917,164 _01789 Position (kb) 1914 1915 1916Strain fitness (log2 ratio) -2 -1 0 1 2at 1913.983 kb on - strandat 1913.988 kb on - strandat 1913.992 kb on + strandat 1914.014 kb on - strandat 1914.014 kb on - strandat 1914.022 kb on - strandat 1914.077 kb on + strand, within CCNA_01786at 1914.120 kb on - strand, within CCNA_01786at 1914.122 kb on + strand, within CCNA_01786at 1914.122 kb on + strand, within CCNA_01786at 1914.130 kb on - strand, within CCNA_01786at 1914.130 kb on - strand, within CCNA_01786at 1914.130 kb on - strandat 1914.130 kb on - strand, within CCNA_01786at 1914.145 kb on - strand, within CCNA_01786at 1914.168 kb on + strand, within CCNA_01786at 1914.191 kb on + strand, within CCNA_01786at 1914.208 kb on - strand, within CCNA_01786at 1914.371 kb on + strand, within CCNA_01786at 1914.379 kb on - strand, within CCNA_01786at 1914.385 kb on + strand, within CCNA_01786at 1914.387 kb on + strand, within CCNA_01786at 1914.392 kb on + strand, within CCNA_01786at 1914.400 kb on - strand, within CCNA_01786at 1914.431 kb on - strand, within CCNA_01786at 1914.481 kb on + strand, within CCNA_01786at 1914.481 kb on + strand, within CCNA_01786at 1914.496 kb on + strand, within CCNA_01786at 1914.534 kb on + strand, within CCNA_01786at 1914.542 kb on - strand, within CCNA_01786at 1914.563 kb on + strand, within CCNA_01786at 1914.568 kb on + strand, within CCNA_01786at 1914.571 kb on - strand, within CCNA_01786at 1914.576 kb on - strand, within CCNA_01786at 1914.576 kb on - strand, within CCNA_01786at 1914.651 kb on + strand, within CCNA_01786at 1914.714 kb on + strandat 1914.714 kb on + strandat 1914.730 kb on + strandat 1914.730 kb on + strandat 1914.730 kb on + strandat 1914.738 kb on + strandat 1914.738 kb on - strandat 1914.748 kb on + strandat 1914.748 kb on + strandat 1914.771 kb on + strandat 1914.827 kb on + strandat 1914.862 kb on - strandat 1914.863 kb on + strandat 1914.865 kb on + strandat 1914.871 kb on - strandat 1914.919 kb on - strandat 1916.012 kb on + strandat 1916.068 kb on - strandat 1916.346 kb on + strand, within CCNA_01788at 1916.346 kb on + strand, within CCNA_01788at 1916.346 kb on + strand, within CCNA_01788at 1916.346 kb on + strand, within CCNA_01788at 1916.346 kb on + strand, within CCNA_01788at 1916.346 kb on + strand, within CCNA_01788at 1916.380 kb on + strand, within CCNA_01788at 1916.380 kb on + strand, within CCNA_01788at 1916.388 kb on - strand, within CCNA_01788at 1916.405 kb on - strand, within CCNA_01788at 1916.455 kb on + strandat 1916.463 kb on + strandat 1916.476 kb on - strandat 1916.484 kb on - strandat 1916.509 kb on + strandat 1916.517 kb on - strandat 1916.569 kb on + strandat 1916.601 kb on - strandat 1916.601 kb on - strandat 1916.612 kb on + strandat 1916.631 kb on - strandat 1916.652 kb on - strandat 1916.654 kb on + strandat 1916.654 kb on - strandat 1916.668 kb on - strandat 1916.692 kb on - strandat 1916.715 kb on - strand, within CCNA_01789at 1916.775 kb on - strand, within CCNA_01789at 1916.847 kb on + strand, within CCNA_01789at 1916.853 kb on + strand, within CCNA_01789at 1916.853 kb on + strand, within CCNA_01789at 1916.853 kb on + strand, within CCNA_01789

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Thallium(I) acetate 0.002 mg/ml
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1,913,983 - +1.0
1,913,988 - -0.6
1,913,992 + -0.0
1,914,014 - -1.0
1,914,014 - -0.0
1,914,022 - -0.1
1,914,077 + CCNA_01786 0.11 +2.0
1,914,120 - CCNA_01786 0.17 -0.5
1,914,122 + CCNA_01786 0.17 +0.1
1,914,122 + CCNA_01786 0.17 +0.3
1,914,130 - CCNA_01786 0.18 -1.1
1,914,130 - CCNA_01786 0.18 +0.4
1,914,130 - +1.0
1,914,130 - CCNA_01786 0.18 +0.2
1,914,145 - CCNA_01786 0.20 -0.4
1,914,168 + CCNA_01786 0.23 +0.9
1,914,191 + CCNA_01786 0.26 +0.5
1,914,208 - CCNA_01786 0.29 -2.5
1,914,371 + CCNA_01786 0.51 +0.3
1,914,379 - CCNA_01786 0.52 +0.2
1,914,385 + CCNA_01786 0.52 +0.6
1,914,387 + CCNA_01786 0.53 -0.5
1,914,392 + CCNA_01786 0.53 +0.3
1,914,400 - CCNA_01786 0.55 -0.6
1,914,431 - CCNA_01786 0.59 -0.9
1,914,481 + CCNA_01786 0.65 +1.3
1,914,481 + CCNA_01786 0.65 +1.3
1,914,496 + CCNA_01786 0.67 +0.4
1,914,534 + CCNA_01786 0.73 +0.5
1,914,542 - CCNA_01786 0.74 -0.3
1,914,563 + CCNA_01786 0.77 -0.0
1,914,568 + CCNA_01786 0.77 +0.5
1,914,571 - CCNA_01786 0.78 -1.0
1,914,576 - CCNA_01786 0.78 +0.7
1,914,576 - CCNA_01786 0.78 -1.3
1,914,651 + CCNA_01786 0.88 +1.3
1,914,714 + +0.4
1,914,714 + +0.7
1,914,730 + -0.4
1,914,730 + +0.2
1,914,730 + +0.9
1,914,738 + +1.7
1,914,738 - -1.6
1,914,748 + -0.9
1,914,748 + +0.2
1,914,771 + -1.3
1,914,827 + +0.1
1,914,862 - -0.2
1,914,863 + +0.5
1,914,865 + +0.3
1,914,871 - +0.2
1,914,919 - +1.6
1,916,012 + +0.6
1,916,068 - -0.1
1,916,346 + CCNA_01788 0.65 +0.8
1,916,346 + CCNA_01788 0.65 -1.0
1,916,346 + CCNA_01788 0.65 -0.4
1,916,346 + CCNA_01788 0.65 -0.7
1,916,346 + CCNA_01788 0.65 -1.2
1,916,346 + CCNA_01788 0.65 -1.1
1,916,380 + CCNA_01788 0.75 -0.7
1,916,380 + CCNA_01788 0.75 -0.4
1,916,388 - CCNA_01788 0.77 -1.3
1,916,405 - CCNA_01788 0.82 -2.0
1,916,455 + -0.4
1,916,463 + -0.2
1,916,476 - +1.3
1,916,484 - -0.4
1,916,509 + +1.3
1,916,517 - +0.3
1,916,569 + +1.2
1,916,601 - -0.7
1,916,601 - +1.1
1,916,612 + -0.0
1,916,631 - +2.2
1,916,652 - +0.5
1,916,654 + -0.0
1,916,654 - +0.4
1,916,668 - +1.4
1,916,692 - +0.6
1,916,715 - CCNA_01789 0.13 +0.2
1,916,775 - CCNA_01789 0.24 +1.2
1,916,847 + CCNA_01789 0.38 +1.5
1,916,853 + CCNA_01789 0.40 +0.6
1,916,853 + CCNA_01789 0.40 -0.4
1,916,853 + CCNA_01789 0.40 +0.0

Or see this region's nucleotide sequence