Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_474

Experiment: Dimethyl Sulfoxide 6 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_472 and Ac3H11_473 are separated by 327 nucleotidesAc3H11_473 and Ac3H11_474 are separated by 106 nucleotidesAc3H11_474 and Ac3H11_475 are separated by 150 nucleotides Ac3H11_472 - FIG000557: hypothetical protein co-occurring with RecR, at 169,317 to 169,649 _472 Ac3H11_473 - Recombination protein RecR, at 169,977 to 170,486 _473 Ac3H11_474 - probable membrane protein NMA1176, at 170,593 to 171,006 _474 Ac3H11_475 - Hydroxymethylpyrimidine ABC transporter, substrate-binding component, at 171,157 to 172,233 _475 Position (kb) 170 171 172Strain fitness (log2 ratio) -2 -1 0 1 2at 169.708 kb on + strandat 169.708 kb on + strandat 169.709 kb on - strandat 169.709 kb on - strandat 169.709 kb on - strandat 169.709 kb on - strandat 169.717 kb on + strandat 169.717 kb on + strandat 169.717 kb on + strandat 169.717 kb on + strandat 169.717 kb on + strandat 169.717 kb on + strandat 169.718 kb on - strandat 169.746 kb on + strandat 169.746 kb on + strandat 169.747 kb on - strandat 169.747 kb on - strandat 169.767 kb on - strandat 169.787 kb on + strandat 169.787 kb on + strandat 169.787 kb on + strandat 169.788 kb on - strandat 169.788 kb on - strandat 169.842 kb on + strandat 169.843 kb on - strandat 169.843 kb on - strandat 169.843 kb on - strandat 169.866 kb on + strandat 169.866 kb on + strandat 169.867 kb on - strandat 169.867 kb on - strandat 170.205 kb on + strand, within Ac3H11_473at 170.205 kb on + strand, within Ac3H11_473at 170.205 kb on + strand, within Ac3H11_473at 170.205 kb on + strand, within Ac3H11_473at 170.205 kb on + strand, within Ac3H11_473at 170.205 kb on + strand, within Ac3H11_473at 170.205 kb on + strand, within Ac3H11_473at 170.205 kb on + strand, within Ac3H11_473at 170.205 kb on + strand, within Ac3H11_473at 170.205 kb on + strand, within Ac3H11_473at 170.206 kb on - strand, within Ac3H11_473at 170.206 kb on - strand, within Ac3H11_473at 170.206 kb on - strand, within Ac3H11_473at 170.439 kb on + strandat 170.439 kb on + strandat 170.439 kb on + strandat 170.440 kb on - strandat 170.529 kb on + strandat 170.905 kb on + strand, within Ac3H11_474at 170.905 kb on + strand, within Ac3H11_474at 170.906 kb on - strand, within Ac3H11_474at 170.917 kb on + strand, within Ac3H11_474at 170.917 kb on + strand, within Ac3H11_474at 170.917 kb on + strand, within Ac3H11_474at 170.917 kb on + strand, within Ac3H11_474at 170.917 kb on + strand, within Ac3H11_474at 170.917 kb on + strand, within Ac3H11_474at 170.917 kb on + strand, within Ac3H11_474at 170.917 kb on + strand, within Ac3H11_474at 170.917 kb on + strand, within Ac3H11_474at 170.917 kb on + strand, within Ac3H11_474at 170.917 kb on + strand, within Ac3H11_474at 170.917 kb on + strand, within Ac3H11_474at 170.917 kb on + strand, within Ac3H11_474at 170.917 kb on + strand, within Ac3H11_474at 170.917 kb on + strand, within Ac3H11_474at 170.917 kb on + strand, within Ac3H11_474at 170.917 kb on + strand, within Ac3H11_474at 170.917 kb on + strand, within Ac3H11_474at 170.917 kb on + strand, within Ac3H11_474at 170.917 kb on + strand, within Ac3H11_474at 170.917 kb on + strand, within Ac3H11_474at 170.917 kb on + strand, within Ac3H11_474at 170.917 kb on + strand, within Ac3H11_474at 170.917 kb on + strand, within Ac3H11_474at 170.917 kb on + strand, within Ac3H11_474at 170.917 kb on + strand, within Ac3H11_474at 170.917 kb on + strand, within Ac3H11_474at 170.918 kb on - strand, within Ac3H11_474at 170.918 kb on - strand, within Ac3H11_474at 170.918 kb on - strand, within Ac3H11_474at 170.918 kb on - strand, within Ac3H11_474at 170.918 kb on - strand, within Ac3H11_474at 170.918 kb on - strand, within Ac3H11_474at 170.918 kb on - strand, within Ac3H11_474at 170.918 kb on - strand, within Ac3H11_474at 170.918 kb on - strand, within Ac3H11_474at 170.918 kb on - strand, within Ac3H11_474at 170.918 kb on - strand, within Ac3H11_474at 170.918 kb on - strand, within Ac3H11_474at 170.918 kb on - strand, within Ac3H11_474at 170.918 kb on - strand, within Ac3H11_474at 170.918 kb on - strand, within Ac3H11_474at 170.918 kb on - strand, within Ac3H11_474at 170.918 kb on - strand, within Ac3H11_474at 170.918 kb on - strand, within Ac3H11_474at 170.918 kb on - strand, within Ac3H11_474at 170.918 kb on - strand, within Ac3H11_474at 171.084 kb on + strandat 171.084 kb on + strandat 171.084 kb on + strandat 171.085 kb on - strandat 171.085 kb on - strandat 171.088 kb on + strandat 171.088 kb on + strandat 171.088 kb on + strandat 171.088 kb on + strandat 171.089 kb on - strandat 171.089 kb on - strandat 171.089 kb on - strandat 171.089 kb on - strandat 171.089 kb on - strandat 171.328 kb on + strand, within Ac3H11_475at 171.329 kb on - strand, within Ac3H11_475at 171.329 kb on - strand, within Ac3H11_475at 171.329 kb on - strand, within Ac3H11_475at 171.329 kb on - strand, within Ac3H11_475at 171.329 kb on - strand, within Ac3H11_475at 171.329 kb on - strand, within Ac3H11_475at 171.329 kb on - strand, within Ac3H11_475at 171.365 kb on - strand, within Ac3H11_475at 171.374 kb on + strand, within Ac3H11_475at 171.375 kb on - strand, within Ac3H11_475at 171.580 kb on + strand, within Ac3H11_475at 171.580 kb on + strand, within Ac3H11_475at 171.581 kb on - strand, within Ac3H11_475at 171.581 kb on - strand, within Ac3H11_475at 171.861 kb on - strand, within Ac3H11_475at 171.893 kb on - strand, within Ac3H11_475at 171.893 kb on - strand, within Ac3H11_475at 171.945 kb on + strand, within Ac3H11_475

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Per-strain Table

Position Strand Gene LocusTag Fraction Dimethyl Sulfoxide 6 vol%
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169,708 + +0.5
169,708 + +0.0
169,709 - -0.3
169,709 - +0.7
169,709 - +0.6
169,709 - +0.1
169,717 + +0.5
169,717 + -0.5
169,717 + -0.2
169,717 + +1.0
169,717 + -0.2
169,717 + -0.6
169,718 - -0.9
169,746 + -0.5
169,746 + -0.4
169,747 - -0.9
169,747 - +0.3
169,767 - +0.7
169,787 + +1.4
169,787 + -0.6
169,787 + -0.3
169,788 - -0.4
169,788 - -0.2
169,842 + -0.3
169,843 - -0.4
169,843 - +0.4
169,843 - +0.4
169,866 + +0.0
169,866 + +0.5
169,867 - -0.5
169,867 - -0.2
170,205 + Ac3H11_473 0.45 -0.3
170,205 + Ac3H11_473 0.45 +0.8
170,205 + Ac3H11_473 0.45 +0.0
170,205 + Ac3H11_473 0.45 +0.7
170,205 + Ac3H11_473 0.45 -0.3
170,205 + Ac3H11_473 0.45 -1.2
170,205 + Ac3H11_473 0.45 -0.3
170,205 + Ac3H11_473 0.45 -0.5
170,205 + Ac3H11_473 0.45 +0.0
170,205 + Ac3H11_473 0.45 +0.6
170,206 - Ac3H11_473 0.45 -1.8
170,206 - Ac3H11_473 0.45 +0.0
170,206 - Ac3H11_473 0.45 -1.1
170,439 + -0.0
170,439 + +1.1
170,439 + -0.0
170,440 - +0.5
170,529 + -0.2
170,905 + Ac3H11_474 0.75 +1.8
170,905 + Ac3H11_474 0.75 +0.5
170,906 - Ac3H11_474 0.76 +1.4
170,917 + Ac3H11_474 0.78 +0.5
170,917 + Ac3H11_474 0.78 -0.1
170,917 + Ac3H11_474 0.78 -0.7
170,917 + Ac3H11_474 0.78 -0.5
170,917 + Ac3H11_474 0.78 +0.7
170,917 + Ac3H11_474 0.78 -0.1
170,917 + Ac3H11_474 0.78 +0.2
170,917 + Ac3H11_474 0.78 +0.5
170,917 + Ac3H11_474 0.78 -0.8
170,917 + Ac3H11_474 0.78 -0.4
170,917 + Ac3H11_474 0.78 -0.0
170,917 + Ac3H11_474 0.78 +0.5
170,917 + Ac3H11_474 0.78 -1.1
170,917 + Ac3H11_474 0.78 -2.0
170,917 + Ac3H11_474 0.78 +0.4
170,917 + Ac3H11_474 0.78 -0.2
170,917 + Ac3H11_474 0.78 -0.7
170,917 + Ac3H11_474 0.78 +0.1
170,917 + Ac3H11_474 0.78 +0.1
170,917 + Ac3H11_474 0.78 +0.2
170,917 + Ac3H11_474 0.78 +0.4
170,917 + Ac3H11_474 0.78 +0.3
170,917 + Ac3H11_474 0.78 +0.4
170,917 + Ac3H11_474 0.78 -0.2
170,917 + Ac3H11_474 0.78 -1.2
170,917 + Ac3H11_474 0.78 +0.0
170,917 + Ac3H11_474 0.78 -0.4
170,918 - Ac3H11_474 0.79 +1.3
170,918 - Ac3H11_474 0.79 -0.3
170,918 - Ac3H11_474 0.79 +0.0
170,918 - Ac3H11_474 0.79 -0.2
170,918 - Ac3H11_474 0.79 -0.3
170,918 - Ac3H11_474 0.79 +0.5
170,918 - Ac3H11_474 0.79 +0.6
170,918 - Ac3H11_474 0.79 -0.6
170,918 - Ac3H11_474 0.79 +0.9
170,918 - Ac3H11_474 0.79 -1.0
170,918 - Ac3H11_474 0.79 +0.2
170,918 - Ac3H11_474 0.79 +2.4
170,918 - Ac3H11_474 0.79 +0.8
170,918 - Ac3H11_474 0.79 +0.7
170,918 - Ac3H11_474 0.79 +0.2
170,918 - Ac3H11_474 0.79 -0.0
170,918 - Ac3H11_474 0.79 -0.0
170,918 - Ac3H11_474 0.79 +0.4
170,918 - Ac3H11_474 0.79 +0.8
170,918 - Ac3H11_474 0.79 +0.9
171,084 + -0.7
171,084 + +0.0
171,084 + -0.9
171,085 - -0.7
171,085 - +0.1
171,088 + -0.3
171,088 + -1.5
171,088 + -2.2
171,088 + -0.2
171,089 - +0.9
171,089 - -0.6
171,089 - +0.2
171,089 - +0.5
171,089 - -2.1
171,328 + Ac3H11_475 0.16 -0.2
171,329 - Ac3H11_475 0.16 -0.3
171,329 - Ac3H11_475 0.16 +0.0
171,329 - Ac3H11_475 0.16 +0.4
171,329 - Ac3H11_475 0.16 -0.7
171,329 - Ac3H11_475 0.16 -0.1
171,329 - Ac3H11_475 0.16 +0.4
171,329 - Ac3H11_475 0.16 +1.2
171,365 - Ac3H11_475 0.19 -1.1
171,374 + Ac3H11_475 0.20 -2.1
171,375 - Ac3H11_475 0.20 +0.6
171,580 + Ac3H11_475 0.39 -0.2
171,580 + Ac3H11_475 0.39 -0.7
171,581 - Ac3H11_475 0.39 -0.2
171,581 - Ac3H11_475 0.39 -1.6
171,861 - Ac3H11_475 0.65 -1.5
171,893 - Ac3H11_475 0.68 -0.2
171,893 - Ac3H11_475 0.68 +0.5
171,945 + Ac3H11_475 0.73 +0.0

Or see this region's nucleotide sequence