Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3706

Experiment: Dimethyl Sulfoxide 6 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3706 and Ac3H11_3707 are separated by 4 nucleotides Ac3H11_3706 - Urea ABC transporter, ATPase protein UrtE, at 66,805 to 67,497 _3706 Ac3H11_3707 - Membrane-associated phospholipid phosphatase (EC 3.1.3.27), at 67,502 to 68,398 _3707 Position (kb) 66 67 68Strain fitness (log2 ratio) -2 -1 0 1 2at 66.728 kb on - strandat 66.752 kb on + strandat 66.753 kb on - strandat 66.765 kb on + strandat 66.766 kb on - strandat 66.832 kb on + strandat 66.833 kb on - strandat 66.946 kb on - strand, within Ac3H11_3706at 66.946 kb on - strand, within Ac3H11_3706at 67.111 kb on + strand, within Ac3H11_3706at 67.375 kb on + strand, within Ac3H11_3706at 67.376 kb on - strand, within Ac3H11_3706at 67.376 kb on - strand, within Ac3H11_3706at 67.378 kb on + strand, within Ac3H11_3706at 67.378 kb on + strand, within Ac3H11_3706at 67.408 kb on + strand, within Ac3H11_3706at 67.408 kb on + strand, within Ac3H11_3706at 67.737 kb on + strand, within Ac3H11_3707at 67.752 kb on + strand, within Ac3H11_3707at 67.752 kb on + strand, within Ac3H11_3707at 67.752 kb on + strand, within Ac3H11_3707at 67.753 kb on - strand, within Ac3H11_3707at 67.753 kb on - strand, within Ac3H11_3707at 67.753 kb on - strand, within Ac3H11_3707at 67.794 kb on + strand, within Ac3H11_3707at 67.794 kb on + strand, within Ac3H11_3707at 67.795 kb on - strand, within Ac3H11_3707at 68.463 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Dimethyl Sulfoxide 6 vol%
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66,728 - -0.3
66,752 + -0.0
66,753 - +1.1
66,765 + -2.2
66,766 - +1.1
66,832 + -0.1
66,833 - -0.6
66,946 - Ac3H11_3706 0.20 +1.4
66,946 - Ac3H11_3706 0.20 +0.5
67,111 + Ac3H11_3706 0.44 +0.9
67,375 + Ac3H11_3706 0.82 +0.1
67,376 - Ac3H11_3706 0.82 +0.4
67,376 - Ac3H11_3706 0.82 -0.5
67,378 + Ac3H11_3706 0.83 -1.0
67,378 + Ac3H11_3706 0.83 -1.2
67,408 + Ac3H11_3706 0.87 -1.4
67,408 + Ac3H11_3706 0.87 +0.2
67,737 + Ac3H11_3707 0.26 +2.0
67,752 + Ac3H11_3707 0.28 -1.5
67,752 + Ac3H11_3707 0.28 -0.2
67,752 + Ac3H11_3707 0.28 +0.7
67,753 - Ac3H11_3707 0.28 -0.6
67,753 - Ac3H11_3707 0.28 -0.4
67,753 - Ac3H11_3707 0.28 +1.0
67,794 + Ac3H11_3707 0.33 +2.0
67,794 + Ac3H11_3707 0.33 +0.9
67,795 - Ac3H11_3707 0.33 -0.2
68,463 + +0.2

Or see this region's nucleotide sequence