Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3219

Experiment: Dimethyl Sulfoxide 6 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3218 and Ac3H11_3219 are separated by 310 nucleotidesAc3H11_3219 and Ac3H11_3220 are separated by 54 nucleotides Ac3H11_3218 - Response regulator NasT, at 126,866 to 127,504 _3218 Ac3H11_3219 - hypothetical protein, at 127,815 to 127,949 _3219 Ac3H11_3220 - Nitrate ABC transporter, nitrate-binding protein, at 128,004 to 129,248 _3220 Position (kb) 127 128Strain fitness (log2 ratio) -2 -1 0 1 2at 126.877 kb on + strandat 126.878 kb on - strandat 126.878 kb on - strandat 127.223 kb on + strand, within Ac3H11_3218at 127.223 kb on + strand, within Ac3H11_3218at 127.224 kb on - strand, within Ac3H11_3218at 127.502 kb on + strandat 127.982 kb on + strandat 127.982 kb on + strandat 127.983 kb on - strandat 127.983 kb on - strandat 128.214 kb on + strand, within Ac3H11_3220at 128.215 kb on - strand, within Ac3H11_3220at 128.215 kb on - strand, within Ac3H11_3220at 128.308 kb on - strand, within Ac3H11_3220at 128.319 kb on + strand, within Ac3H11_3220at 128.320 kb on - strand, within Ac3H11_3220at 128.320 kb on - strand, within Ac3H11_3220at 128.481 kb on + strand, within Ac3H11_3220at 128.481 kb on + strand, within Ac3H11_3220at 128.481 kb on + strand, within Ac3H11_3220at 128.481 kb on + strand, within Ac3H11_3220at 128.481 kb on + strand, within Ac3H11_3220at 128.482 kb on - strand, within Ac3H11_3220at 128.482 kb on - strand, within Ac3H11_3220at 128.482 kb on - strand, within Ac3H11_3220at 128.482 kb on - strand, within Ac3H11_3220at 128.482 kb on - strand, within Ac3H11_3220at 128.532 kb on + strand, within Ac3H11_3220at 128.532 kb on + strand, within Ac3H11_3220at 128.532 kb on + strand, within Ac3H11_3220at 128.533 kb on - strand, within Ac3H11_3220at 128.533 kb on - strand, within Ac3H11_3220at 128.880 kb on + strand, within Ac3H11_3220at 128.880 kb on + strand, within Ac3H11_3220at 128.880 kb on + strand, within Ac3H11_3220at 128.880 kb on + strand, within Ac3H11_3220at 128.881 kb on - strand, within Ac3H11_3220at 128.881 kb on - strand, within Ac3H11_3220at 128.881 kb on - strand, within Ac3H11_3220at 128.881 kb on - strand, within Ac3H11_3220

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Per-strain Table

Position Strand Gene LocusTag Fraction Dimethyl Sulfoxide 6 vol%
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126,877 + +1.2
126,878 - +0.8
126,878 - -0.4
127,223 + Ac3H11_3218 0.56 -1.1
127,223 + Ac3H11_3218 0.56 +0.1
127,224 - Ac3H11_3218 0.56 +0.3
127,502 + +0.6
127,982 + +2.1
127,982 + +0.1
127,983 - +0.3
127,983 - +1.3
128,214 + Ac3H11_3220 0.17 -0.3
128,215 - Ac3H11_3220 0.17 -0.4
128,215 - Ac3H11_3220 0.17 -0.2
128,308 - Ac3H11_3220 0.24 -1.0
128,319 + Ac3H11_3220 0.25 +1.2
128,320 - Ac3H11_3220 0.25 -1.2
128,320 - Ac3H11_3220 0.25 +0.0
128,481 + Ac3H11_3220 0.38 -0.8
128,481 + Ac3H11_3220 0.38 +2.2
128,481 + Ac3H11_3220 0.38 +1.9
128,481 + Ac3H11_3220 0.38 -1.7
128,481 + Ac3H11_3220 0.38 -0.7
128,482 - Ac3H11_3220 0.38 -0.5
128,482 - Ac3H11_3220 0.38 -0.4
128,482 - Ac3H11_3220 0.38 -1.2
128,482 - Ac3H11_3220 0.38 -0.8
128,482 - Ac3H11_3220 0.38 -0.3
128,532 + Ac3H11_3220 0.42 +0.1
128,532 + Ac3H11_3220 0.42 +0.2
128,532 + Ac3H11_3220 0.42 +0.1
128,533 - Ac3H11_3220 0.42 +0.3
128,533 - Ac3H11_3220 0.42 +1.1
128,880 + Ac3H11_3220 0.70 -0.1
128,880 + Ac3H11_3220 0.70 +0.3
128,880 + Ac3H11_3220 0.70 +0.6
128,880 + Ac3H11_3220 0.70 -2.7
128,881 - Ac3H11_3220 0.70 -0.6
128,881 - Ac3H11_3220 0.70 +0.1
128,881 - Ac3H11_3220 0.70 +0.2
128,881 - Ac3H11_3220 0.70 +0.1

Or see this region's nucleotide sequence