Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1992

Experiment: Dimethyl Sulfoxide 6 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_1990 and Ac3H11_1991 are separated by 89 nucleotidesAc3H11_1991 and Ac3H11_1992 are separated by 119 nucleotidesAc3H11_1992 and Ac3H11_1993 are separated by 113 nucleotidesAc3H11_1993 and Ac3H11_1994 overlap by 4 nucleotides Ac3H11_1990 - Transcriptional regulator, LysR family, at 207,082 to 207,957 _1990 Ac3H11_1991 - hypothetical protein, at 208,047 to 208,244 _1991 Ac3H11_1992 - Glutathione S-transferase (EC 2.5.1.18), at 208,364 to 209,068 _1992 Ac3H11_1993 - Diaminopimelate epimerase (EC 5.1.1.7), at 209,182 to 210,042 _1993 Ac3H11_1994 - Protein of unknown function DUF484, at 210,039 to 210,731 _1994 Position (kb) 208 209 210Strain fitness (log2 ratio) -2 -1 0 1 2at 207.424 kb on + strand, within Ac3H11_1990at 207.425 kb on - strand, within Ac3H11_1990at 207.463 kb on + strand, within Ac3H11_1990at 207.463 kb on + strand, within Ac3H11_1990at 207.464 kb on - strand, within Ac3H11_1990at 207.464 kb on - strand, within Ac3H11_1990at 207.464 kb on - strand, within Ac3H11_1990at 207.464 kb on - strand, within Ac3H11_1990at 207.583 kb on + strand, within Ac3H11_1990at 207.584 kb on - strand, within Ac3H11_1990at 207.883 kb on + strandat 207.883 kb on + strandat 207.884 kb on - strandat 207.884 kb on - strandat 207.884 kb on - strandat 207.884 kb on - strandat 207.884 kb on - strandat 207.884 kb on - strandat 207.886 kb on + strandat 208.279 kb on + strandat 208.279 kb on + strandat 208.280 kb on - strandat 208.280 kb on - strandat 208.280 kb on - strandat 208.280 kb on - strandat 208.280 kb on - strandat 208.280 kb on - strandat 208.479 kb on + strand, within Ac3H11_1992at 208.479 kb on + strand, within Ac3H11_1992at 208.479 kb on + strand, within Ac3H11_1992at 208.533 kb on + strand, within Ac3H11_1992at 208.533 kb on + strand, within Ac3H11_1992at 208.533 kb on + strand, within Ac3H11_1992at 208.533 kb on + strand, within Ac3H11_1992at 208.534 kb on - strand, within Ac3H11_1992at 208.534 kb on - strand, within Ac3H11_1992at 208.534 kb on - strand, within Ac3H11_1992at 208.534 kb on - strand, within Ac3H11_1992at 208.534 kb on - strand, within Ac3H11_1992at 208.534 kb on - strand, within Ac3H11_1992at 208.581 kb on - strand, within Ac3H11_1992at 208.611 kb on + strand, within Ac3H11_1992at 208.612 kb on - strand, within Ac3H11_1992at 208.612 kb on - strand, within Ac3H11_1992at 208.614 kb on - strand, within Ac3H11_1992at 208.782 kb on + strand, within Ac3H11_1992at 208.783 kb on - strand, within Ac3H11_1992at 208.783 kb on - strand, within Ac3H11_1992at 208.783 kb on - strand, within Ac3H11_1992at 208.935 kb on + strand, within Ac3H11_1992at 208.935 kb on + strand, within Ac3H11_1992at 208.935 kb on + strand, within Ac3H11_1992at 208.935 kb on + strand, within Ac3H11_1992at 208.936 kb on - strand, within Ac3H11_1992at 208.936 kb on - strand, within Ac3H11_1992at 208.936 kb on - strand, within Ac3H11_1992at 208.999 kb on - strandat 209.113 kb on + strandat 209.114 kb on - strandat 209.114 kb on - strandat 209.149 kb on + strandat 209.149 kb on + strandat 209.149 kb on + strandat 210.038 kb on + strandat 210.038 kb on + strandat 210.038 kb on + strandat 210.038 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Dimethyl Sulfoxide 6 vol%
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207,424 + Ac3H11_1990 0.39 -0.9
207,425 - Ac3H11_1990 0.39 -1.0
207,463 + Ac3H11_1990 0.43 -1.6
207,463 + Ac3H11_1990 0.43 +0.1
207,464 - Ac3H11_1990 0.44 +0.5
207,464 - Ac3H11_1990 0.44 -0.7
207,464 - Ac3H11_1990 0.44 -1.4
207,464 - Ac3H11_1990 0.44 -1.2
207,583 + Ac3H11_1990 0.57 -1.0
207,584 - Ac3H11_1990 0.57 +0.0
207,883 + +0.7
207,883 + -0.7
207,884 - +0.4
207,884 - -0.2
207,884 - -1.8
207,884 - +0.3
207,884 - +0.5
207,884 - -1.2
207,886 + +2.6
208,279 + +0.5
208,279 + -0.3
208,280 - -0.2
208,280 - -1.1
208,280 - -1.6
208,280 - -0.1
208,280 - -0.2
208,280 - +0.3
208,479 + Ac3H11_1992 0.16 -0.7
208,479 + Ac3H11_1992 0.16 +0.5
208,479 + Ac3H11_1992 0.16 -0.1
208,533 + Ac3H11_1992 0.24 -1.6
208,533 + Ac3H11_1992 0.24 +0.1
208,533 + Ac3H11_1992 0.24 +1.1
208,533 + Ac3H11_1992 0.24 -0.5
208,534 - Ac3H11_1992 0.24 +0.2
208,534 - Ac3H11_1992 0.24 -0.1
208,534 - Ac3H11_1992 0.24 +1.6
208,534 - Ac3H11_1992 0.24 -0.2
208,534 - Ac3H11_1992 0.24 +0.8
208,534 - Ac3H11_1992 0.24 +0.0
208,581 - Ac3H11_1992 0.31 +0.4
208,611 + Ac3H11_1992 0.35 +0.1
208,612 - Ac3H11_1992 0.35 +0.3
208,612 - Ac3H11_1992 0.35 -0.1
208,614 - Ac3H11_1992 0.35 +0.1
208,782 + Ac3H11_1992 0.59 +1.2
208,783 - Ac3H11_1992 0.59 -1.8
208,783 - Ac3H11_1992 0.59 +1.1
208,783 - Ac3H11_1992 0.59 +1.1
208,935 + Ac3H11_1992 0.81 -0.8
208,935 + Ac3H11_1992 0.81 -0.5
208,935 + Ac3H11_1992 0.81 -1.5
208,935 + Ac3H11_1992 0.81 -1.0
208,936 - Ac3H11_1992 0.81 -0.2
208,936 - Ac3H11_1992 0.81 +0.5
208,936 - Ac3H11_1992 0.81 -0.6
208,999 - -1.0
209,113 + -0.4
209,114 - -0.1
209,114 - -0.0
209,149 + -0.5
209,149 + +0.1
209,149 + +0.5
210,038 + -0.1
210,038 + +1.1
210,038 + -0.3
210,038 + +0.8

Or see this region's nucleotide sequence