Experiment: L-Isoleucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS16175 and ABZR86_RS16180 are separated by 477 nucleotides ABZR86_RS16180 and ABZR86_RS16185 overlap by 1 nucleotides
ABZR86_RS16175: ABZR86_RS16175 - hypothetical protein, at 3,653,885 to 3,654,145
_RS16175
ABZR86_RS16180: ABZR86_RS16180 - Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB, at 3,654,623 to 3,655,900
_RS16180
ABZR86_RS16185: ABZR86_RS16185 - NAD-dependent epimerase, at 3,655,900 to 3,656,910
_RS16185
Position (kb)
3654
3655
3656 Strain fitness (log2 ratio)
-1
0
1 at 3653.648 kb on + strand at 3653.794 kb on + strand at 3653.794 kb on + strand at 3653.845 kb on + strand at 3653.845 kb on + strand at 3653.845 kb on + strand at 3653.845 kb on + strand at 3653.845 kb on + strand at 3653.845 kb on + strand at 3653.845 kb on + strand at 3653.845 kb on + strand at 3653.845 kb on + strand at 3653.845 kb on + strand at 3653.846 kb on - strand at 3653.846 kb on - strand at 3654.233 kb on + strand at 3654.233 kb on + strand at 3654.258 kb on + strand at 3654.258 kb on + strand at 3654.258 kb on + strand at 3654.258 kb on + strand at 3654.259 kb on - strand at 3654.259 kb on - strand at 3654.259 kb on - strand at 3654.259 kb on - strand at 3654.259 kb on - strand at 3654.260 kb on + strand at 3654.260 kb on + strand at 3654.260 kb on + strand at 3654.260 kb on + strand at 3654.260 kb on + strand at 3654.260 kb on + strand at 3654.261 kb on - strand at 3654.261 kb on - strand at 3654.261 kb on - strand at 3654.261 kb on - strand at 3654.320 kb on + strand at 3654.376 kb on + strand at 3654.377 kb on - strand at 3654.377 kb on - strand at 3654.401 kb on + strand at 3654.474 kb on + strand at 3654.475 kb on - strand at 3654.475 kb on - strand at 3654.475 kb on - strand at 3654.475 kb on - strand at 3654.570 kb on + strand at 3654.570 kb on + strand at 3654.620 kb on + strand at 3654.620 kb on + strand at 3654.620 kb on + strand at 3654.620 kb on + strand at 3654.620 kb on + strand at 3654.620 kb on + strand at 3654.620 kb on + strand at 3654.621 kb on - strand at 3654.621 kb on - strand at 3654.669 kb on - strand at 3654.669 kb on - strand at 3654.974 kb on + strand, within ABZR86_RS16180 at 3654.974 kb on + strand, within ABZR86_RS16180 at 3654.974 kb on + strand, within ABZR86_RS16180 at 3654.974 kb on + strand, within ABZR86_RS16180 at 3654.974 kb on + strand, within ABZR86_RS16180 at 3655.328 kb on - strand, within ABZR86_RS16180 at 3655.328 kb on - strand, within ABZR86_RS16180 at 3655.425 kb on - strand, within ABZR86_RS16180 at 3655.758 kb on - strand, within ABZR86_RS16180 at 3655.758 kb on - strand, within ABZR86_RS16180 at 3655.758 kb on - strand, within ABZR86_RS16180 at 3655.827 kb on - strand at 3655.827 kb on - strand at 3655.851 kb on - strand at 3655.862 kb on + strand at 3656.065 kb on - strand, within ABZR86_RS16185 at 3656.065 kb on - strand, within ABZR86_RS16185 at 3656.065 kb on - strand, within ABZR86_RS16185 at 3656.065 kb on - strand, within ABZR86_RS16185 at 3656.065 kb on - strand, within ABZR86_RS16185 at 3656.065 kb on - strand, within ABZR86_RS16185 at 3656.065 kb on - strand, within ABZR86_RS16185 at 3656.124 kb on + strand, within ABZR86_RS16185 at 3656.124 kb on + strand, within ABZR86_RS16185 at 3656.354 kb on - strand, within ABZR86_RS16185 at 3656.395 kb on + strand, within ABZR86_RS16185 at 3656.718 kb on + strand, within ABZR86_RS16185 at 3656.865 kb on + strand at 3656.866 kb on - strand at 3656.897 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (N) remove 3,653,648 + +0.4 3,653,794 + +0.6 3,653,794 + -0.6 3,653,845 + +0.4 3,653,845 + -0.4 3,653,845 + +0.1 3,653,845 + -0.3 3,653,845 + +0.9 3,653,845 + +1.1 3,653,845 + +0.1 3,653,845 + -0.7 3,653,845 + -0.3 3,653,845 + +0.7 3,653,846 - +0.4 3,653,846 - +0.7 3,654,233 + -0.3 3,654,233 + -0.4 3,654,258 + -0.1 3,654,258 + +0.5 3,654,258 + -0.2 3,654,258 + -0.8 3,654,259 - -0.9 3,654,259 - -1.4 3,654,259 - -1.5 3,654,259 - +1.0 3,654,259 - +1.1 3,654,260 + +0.0 3,654,260 + +0.1 3,654,260 + +0.3 3,654,260 + +0.1 3,654,260 + -0.1 3,654,260 + -0.3 3,654,261 - +0.1 3,654,261 - -0.2 3,654,261 - -0.0 3,654,261 - +0.1 3,654,320 + +0.8 3,654,376 + -0.5 3,654,377 - +0.2 3,654,377 - -0.9 3,654,401 + -0.0 3,654,474 + -0.5 3,654,475 - -0.1 3,654,475 - +0.1 3,654,475 - +0.2 3,654,475 - -0.3 3,654,570 + -0.3 3,654,570 + +0.6 3,654,620 + +0.1 3,654,620 + -0.4 3,654,620 + +0.2 3,654,620 + +0.2 3,654,620 + -0.3 3,654,620 + -0.4 3,654,620 + -0.8 3,654,621 - -0.1 3,654,621 - -0.2 3,654,669 - +1.1 3,654,669 - +0.4 3,654,974 + ABZR86_RS16180 0.27 +0.2 3,654,974 + ABZR86_RS16180 0.27 +0.8 3,654,974 + ABZR86_RS16180 0.27 +0.1 3,654,974 + ABZR86_RS16180 0.27 +0.4 3,654,974 + ABZR86_RS16180 0.27 -0.4 3,655,328 - ABZR86_RS16180 0.55 +0.1 3,655,328 - ABZR86_RS16180 0.55 +0.0 3,655,425 - ABZR86_RS16180 0.63 -0.0 3,655,758 - ABZR86_RS16180 0.89 -0.7 3,655,758 - ABZR86_RS16180 0.89 -0.0 3,655,758 - ABZR86_RS16180 0.89 -0.8 3,655,827 - -0.2 3,655,827 - -0.0 3,655,851 - -0.1 3,655,862 + +0.7 3,656,065 - ABZR86_RS16185 0.16 +0.1 3,656,065 - ABZR86_RS16185 0.16 +0.1 3,656,065 - ABZR86_RS16185 0.16 +0.5 3,656,065 - ABZR86_RS16185 0.16 -0.1 3,656,065 - ABZR86_RS16185 0.16 +0.1 3,656,065 - ABZR86_RS16185 0.16 -0.6 3,656,065 - ABZR86_RS16185 0.16 -0.1 3,656,124 + ABZR86_RS16185 0.22 +0.2 3,656,124 + ABZR86_RS16185 0.22 +0.7 3,656,354 - ABZR86_RS16185 0.45 -0.3 3,656,395 + ABZR86_RS16185 0.49 -0.3 3,656,718 + ABZR86_RS16185 0.81 +0.6 3,656,865 + +0.0 3,656,866 - +0.2 3,656,897 - +0.7
Or see this region's nucleotide sequence